Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1501 ATGGCTTCCAATTCTGGAGATGGATCTTCGCTCGATCCCGCGAGCTCGAGCGAGGCGGAGAAGCCGCCGATTGAGCCTCTAAGGATGCCTACAATCGAAGAGATTCGCGGCCAAGATATTTGGAACAACTGTGCAGTTCGCAGTGTTGTTAGTGGAGTTATGGGCGGTGGGCTTGGATTGTTCATGGGTTTATTTTTGGGGGCATTGGATAATCCATTGATGCAAGAACAGATGACTGCTAGACAGCAATTTGTTTATACTGCAAAACAGATGGGACGGCGTAGTTGGGGTTCTGCAAAAGCGTTTGCAGTCATGGGCTTTGCTTTCTCAGCAGCAGAATGTGTTGTAGAAAAGGCTCGAGCCAAACATGATACAACTAATACAGTAGTTGCTGGTTGTGTAACTGGTGGTGCAATGTCAGCTAAAGGTGGCCCAAAGGCAGCTTGTGTCGGCTGTGCTGGTTTTGCAGCATTTTCAGTTTTGATAGAGAAATTTTTGGACAGACACAGTTGA 513 47.37 MASNSGDGSSLDPASSSEAEKPPIEPLRMPTIEEIRGQDIWNNCAVRSVVSGVMGGGLGLFMGLFLGALDNPLMQEQMTARQQFVYTAKQMGRRSWGSAKAFAVMGFAFSAAECVVEKARAKHDTTNTVVAGCVTGGAMSAKGGPKAACVGCAGFAAFSVLIEKFLDRHS 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20210570 20216386 - Sed0012478.1 Sed13g1501 735011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1501 170 MobiDBLite consensus disorder prediction 1 26 - -
Sed13g1501 170 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 19 164 IPR039175 GO:0008320(PANTHER)|GO:0030943(PANTHER)|GO:0042721(PANTHER)|GO:0042721(InterPro)|GO:0045039(PANTHER)|GO:0045039(InterPro)
Sed13g1501 170 Pfam Tim17/Tim22/Tim23/Pmp24 family 44 159 - -
Sed13g1501 170 MobiDBLite consensus disorder prediction 1 16 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1501 K17790 - - vvi:100258631 269.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1188 Sed-Chr1:8869457 Sed13g1501 Sed-Chr13:20210570 1.60E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g603 . . . . Bpe09g00139 . Bma10g00585 Bma13g01104 Cmo16g00976 . . . . . . . . . . . . . . . Cla10g00438 Cam10g0437 Cec10g0459 Cco10g0448 Clacu10g0445 Cmu10g1276 Cre10g0692 Cone6ag0032 Cone9ag0034 . . . Csa03g00447 . Cme06g02804 . Blo10g00859 Bda05g00689 Bda12g00947 . Bpe03g00763 . . Sed13g1501 . . . Cma16g00938 . Car16g00902 Cpe14g00762 . Bhi11g00511 Tan01g1798 Cmetu12g0455 . . . . . . . . . . . Lsi05g00530 . Chy06g01870 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011178 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 2 0 1 31