Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1517 ATGGTGAAAGCTGTGGTTGGAGAAGAATCTCGGCTCAAAATCGTCGAGGATCGCCTCGCTCAGTCCGCAATTTCATCGGAGGTACTTTCTCTTTTTCTCCGATCATTTCTCTATGTCGACATTTATGATTTGATTGTTCAACAGATCGGTCTTGTGATCGGACGCCTCAGCTCTCCGTTAGATCGAGGTTTCGTGTTCGATTTGGTTCCAACTCCTCCTAACGATGCCGGAGAGGCGGCTTGCTCGCTCGTCGGCGCCATTAAAGACGATAAGAAGAAAGGATCGAAAGGCAAATCTCCGGCTGTTGATTCATCGTCTTTGGTAATCGATAAGGATTGGGTTGCTGAACACGCTCGCCAGGTTCGTAGAATGCTACCGGGTGGTGTGAAGGTGGTTGGTTTGTATGTATGGGCCAGTGAAACGGCGGTTAAGAGTTCAACCTTAATGCTTTGCCAGACTGTGAAAGCTGTTGCAGAAGCAGCACCACTTTCAGTCATTGACTTGGAGGAAAGAATCCTCATCCATATCTGTTATAGTCCAAGAAGGTGGACGTGTCGAAATTTCTTTTTGACTTCAAACCTCACATCAAGCAGCCTGCGTCCTTGTGATTTTAAAATGGGAAAGGTCTTAACATCACTTCAGACATATAAGTGTATATTCAACTTCAATATGAGGTTACCTGTTTGTAGGACATCAAATGTCCAACGATTAATAGATGCAATTCGTAATGGAATTTCTATTCAAGCTGATGTTCTAAAAAGTGCGAAGGTCGTGATTGATGGAAATCTGGTTGTTAATGATGACCTTTCTACATCAGGTGACTTGCATGAAATTGAATTACTCCTACCATTCCTAAAAAATTCGTCTCTTGAAGCGTGCAGCCAAAAGGATGTTGATGGTATCCTTGTCTTTAGAGGCTCTGTTTGTTCTTTTGCTTACTTGAATTCAAAAGAACCTGTCTCCGAAGCTGTAACGGAAATAAAGGGAGATATCATCACAAGTTTGCAGAGTAGATTGGACATAATATGTGATGAGGTAGATGCAGATAAAGACGTACCTGATGACGTTCATCGCGATGTAAATGAAGTGGCATCAGAACAACACGTTTCTCAGCTCTTCCTTCACTCATCGAGGAAAAAGTGCAACCTCTCATTTCCTCGAAGAGTATTTGTTCCGTGGCTGGCAGACATGTACATCTGCGACTATTTGCAGCCATTCGAGACCACCGAGGTTTTAAAAGAACATTGTACTGAACTAATGTCCATGGAAGCACCAATGGACATGACGACAGTTCTTGAACCAGAAAAAGAGGCTCTTTCCCTCTCTGCAGAGTCATTTTGGGATGTGGCAGTCCCTTACCAATCGATCGAGAAGAAAAACAGAAACGATGATACGAGAAGTGTCCGTAACGTAAATTCAAGCAGCAAATCGAGTGGTATTAATCTTACATTGGCTGTTTTCGTGCTTATCCTTGCAGTTATCATTGGCTTTGTTTTTCTTTTCATGATAGGATCGTAA 1518 42.82 MVKAVVGEESRLKIVEDRLAQSAISSEVLSLFLRSFLYVDIYDLIVQQIGLVIGRLSSPLDRGFVFDLVPTPPNDAGEAACSLVGAIKDDKKKGSKGKSPAVDSSSLVIDKDWVAEHARQVRRMLPGGVKVVGLYVWASETAVKSSTLMLCQTVKAVAEAAPLSVIDLEERILIHICYSPRRWTCRNFFLTSNLTSSSLRPCDFKMGKVLTSLQTYKCIFNFNMRLPVCRTSNVQRLIDAIRNGISIQADVLKSAKVVIDGNLVVNDDLSTSGDLHEIELLLPFLKNSSLEACSQKDVDGILVFRGSVCSFAYLNSKEPVSEAVTEIKGDIITSLQSRLDIICDEVDADKDVPDDVHRDVNEVASEQHVSQLFLHSSRKKCNLSFPRRVFVPWLADMYICDYLQPFETTEVLKEHCTELMSMEAPMDMTTVLEPEKEALSLSAESFWDVAVPYQSIEKKNRNDDTRSVRNVNSSSKSSGINLTLAVFVLILAVIIGFVFLFMIGS 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20357275 20365200 - Sed0009724.3 Sed13g1517 735027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1517 505 PANTHER PROTEIN ODR-4 HOMOLOG 1 501 IPR029454 GO:0008104(PANTHER)|GO:0012505(PANTHER)
Sed13g1517 505 Pfam Odorant response abnormal 4-like 50 427 IPR029454 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1517 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1515 Sed-Chr13:20355445 Sed13g1517 Sed-Chr13:20357275 1.30E-256 dispersed
Sed13g1516 Sed-Chr13:20357275 Sed13g1517 Sed-Chr13:20357275 1.80E-269 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g557 . Blo12g00740 . Bda03g00447 . Bpe04g00410 Bma04g00424 . . . Cma01g01462 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02297 Csa03g04515 Chy04g00188 . . . . . . . . . Sed13g1517 Cmo01g01515 . . . . . . Cpe02g00489 Bhi09g02531 Tan01g3878 Cmetu04g1568 . Hepe01g2187 Mch11g0730 . Cla11g01446 Cam11g1498 Cec11g1535 Cco11g1531 Clacu11g1662 Cmu11g1478 Cre11g1898 . . . Cme04g00218
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009722 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32