Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1525 ATGTCAAAAAAATTGAGAGAAATGAAAAACAGTACAGTTTTACCCAAAAGCCTCAAATTATTTTACCTCTTTTCCTCCTTTTTCTTTTGCTTTGCTTCCTTCATCTCACCAATAACACCACGGCACGACATTGCCTCGAGGACGGGCGTCAATGGACATGGTCCCGATGCCTTGGCACCTCCACTGCAACTCTGCATACACGAACAATACGTTGTGATGGATAATGGGATCGTTGCGGTCACATTATCGAATCCAAAGGGAATGGTCACTGAAATACAATACAATGGAATTGACAACTTGCTTGAGGTTGCCAATGGAGAAGATGATAGAGGGTATTGGGACGTTGTTTGGAATGTTGCAGGAAGTGCAGGAACCAAGGGCATTTTTGATCGGATTGAAGCGACAGATTTCAAAGTGATTGTGGAAAATGACGAACAAATCGAAGTCTCATTCAGCAGAACTTACGATTCATCCACCGAGGAAAACCTAATTCCGTTGAATATCGACAAAAGGTTTGTGATGCTTCGTAATGTATCGGGATTTTATTCTTACGCCATTTACGAGCACTTGAAAGAATGGGCGGCGTTTAACATAGATAACACCAGAATCGTATTCAAGCCACGGAAAGACAAGTTTGGATACACCGCGGTAGCAGATGAGAGACAGAGATTCATGCCTTTGCCCGATGATCGGAAGCCCCCACGAGGGGAAGCCCTCGCTTATCCTGAGGCTGTTCTCCTCGTTGATCCTATAGAGCCCCACTTCAAGGGAGAGGTGGATGACAAGTACCAGTACGGGTGCGAAAGCAAAGAGGCGGGGGTTCACGGGTGGATATCCACCGAGCCGCCCACTGGGCTTTGGCAAATCACACCCAGCCAGGAGAGTCGCTCCGGTGGGCCCCTCAAGCAATTTCTTACCTCCCATGTGGGTCCCACCACCCTTACGGTATTTCATAGCGCGCACTACGCAGGAGAGGATATGGTGATAAAGTTCGGAAGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCTATCTCAATTCCTTGCCTGAAGAAGAAGAGGATCCTCTTAAACTTTGGCAAAATGCTAAAGAACAGATGATGGCTGAAGTTCAAAGCTGGCCTTACAGTTTCCCTGCTTCTGAGGATTTTCTCAAATCAGATCAACGAGGCACTGTCTGTGGCAGATTGATGATCCAAGAGAGATATATGAGCGATGAACCCATGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCCGGAGAAATTGGCTCCTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATGAAAATGGACATTTCTCTTTGAATAATGTTCAAAGTGGAAATTATAGTCTTTATGGATGGGTCCCTAATTTTATTGGAAATTACCAATACAATGCTTCCATCACTGTAAACCCAGGCAGTGATATCAATTTGGATGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTATGGGAAATAGGCATTCCTGATCGTACTGCTGCAGAATTCTATGTACCAGATCCTAATCCTAAGTATATTAACAAACTTTATGTCAATCATTCAGATAAGTTTAGGCAGTATGGATTATGGGAAAGATACACAGAATTATATCCTACCGAGGATCTAGTTTATACAGTTGACCTTAGTGACTACCGAAAAGATTGGTTTTTTGCACAAGTTACCAGGAAGATAGAGGACAACAAATATGCAGGAACTACTTGGAAAATTCAATTCCAACTTGACTGTCCAGATACACATGGAACATATAAGCTGCGTCTTGCATTGGCCACTGCACATGGTGCAGAATTACAAGTTCGAGTGAATGATGAACAAGCAATTCTCCCATTATTCACAACTGGATTGATTGGGAAGGACAACACTATAGCCAGACATGGAATTCACGGTCTCTATCGGCTGTACACCGTTGACATTCCGGGTCGTGAGCTTGTAGAGGGCAACAATACAATTTTTCTCACACAAAAAAGTAGCAACAGCCCTTTTGAGGGGGTTATGTATGATTATCTTCGTTTAGAAGGACCCTTAACTTCCAAAATATAA 2091 43.76 MSKKLREMKNSTVLPKSLKLFYLFSSFFFCFASFISPITPRHDIASRTGVNGHGPDALAPPLQLCIHEQYVVMDNGIVAVTLSNPKGMVTEIQYNGIDNLLEVANGEDDRGYWDVVWNVAGSAGTKGIFDRIEATDFKVIVENDEQIEVSFSRTYDSSTEENLIPLNIDKRFVMLRNVSGFYSYAIYEHLKEWAAFNIDNTRIVFKPRKDKFGYTAVADERQRFMPLPDDRKPPRGEALAYPEAVLLVDPIEPHFKGEVDDKYQYGCESKEAGVHGWISTEPPTGLWQITPSQESRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVIKFGSNEPWKKVFGPIFIYLNSLPEEEEDPLKLWQNAKEQMMAEVQSWPYSFPASEDFLKSDQRGTVCGRLMIQERYMSDEPMPASGAYVGLALPGEIGSWQTESKGYQFWTRADENGHFSLNNVQSGNYSLYGWVPNFIGNYQYNASITVNPGSDINLDELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDKFRQYGLWERYTELYPTEDLVYTVDLSDYRKDWFFAQVTRKIEDNKYAGTTWKIQFQLDCPDTHGTYKLRLALATAHGAELQVRVNDEQAILPLFTTGLIGKDNTIARHGIHGLYRLYTVDIPGRELVEGNNTIFLTQKSSNSPFEGVMYDYLRLEGPLTSKI 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20410113 20423333 + Sed0006943.1 Sed13g1525 735035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1525 696 CDD RGL4_M 391 487 IPR029413 -
Sed13g1525 696 Gene3D - 388 488 - -
Sed13g1525 696 Gene3D - 66 343 IPR014718 GO:0030246(InterPro)
Sed13g1525 696 SUPERFAMILY Starch-binding domain-like 389 489 IPR013784 GO:0030246(InterPro)
Sed13g1525 696 SUPERFAMILY Galactose mutarotase-like 75 350 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Sed13g1525 696 CDD RGL4_C 502 689 - -
Sed13g1525 696 FunFam Rhamnogalacturonate lyase B 388 487 - -
Sed13g1525 696 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 691 IPR051850 -
Sed13g1525 696 Pfam Rhamnogalacturonate lyase family 63 259 IPR010325 -
Sed13g1525 696 CDD RGL4_N 70 350 - -
Sed13g1525 696 SUPERFAMILY Galactose-binding domain-like 497 689 IPR008979 -
Sed13g1525 696 Pfam Polysaccharide lyase family 4, domain II 414 487 IPR029413 -
Sed13g1525 696 Pfam Polysaccharide lyase family 4, domain III 500 688 IPR029411 -
Sed13g1525 696 Gene3D - 498 689 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1525 Sed-Chr13:20410113 Sed13g1527 Sed-Chr13:20423355 8.00E-250 dispersed
Sed13g1525 Sed-Chr13:20410113 Sed13g1526 Sed-Chr13:20410113 0.00E+00 tandem
Sed13g1525 Sed-Chr13:20410113 Sed04g0189 Sed-Chr4:1340280 5.30E-254 wgd
Sed13g1525 Sed-Chr13:20410113 Sed05g1549 Sed-Chr5:29209913 1.50E-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1525 K18195 - csv:101203789 1107.82