Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1526 ATGTCAAAAAAATTGAGAGAAATGAAAAACAGTACAGTTTTACCCAAAAGCCTCAAATTATTTTACCTCTTTTCCTCCTTTTTCTTTTGCTTTGCTTCCTTCATCTCACCAATAACACCACGGCACGACATTGCCTCGAGGACGGGCGTCAATGGACATGGTCCCGATGCCTTGGCACCTCCACTGCAACTCTGCATACACGAACAATACGTTGTGATGGATAATGGGATCGTTGCGGTCACATTATCGAATCCAAAGGGAATGGTCACTGAAATACAATACAATGGAATTGACAACTTGCTTGAGGTTGCCAATGGAGAAGATGATAGAGGGTATTGGGACGTTGTTTGGAATGTTGCAGGAAGTGCAGGAACCAAGGGCATTTTTGATCGGATTGAAGCGACAGATTTCAAAGTGATTGTGGAAAATGACGAACAAATCGAAGTCTCATTCAGCAGAACTTACGATTCATCCACCGAGGAAAACCTAATTCCGTTGAATATCGACAAAAGGTTTGTGATGCTTCGTAATGTATCGGGATTTTATTCTTACGCCATTTACGAGCACTTGAAAGAATGGGCGGCGTTTAACATAGATAACACCAGAATCGTATTCAAGCCACGGAAAGACAAGTTTGGATACACCGCGGTAGCAGATGAGAGACAGAGATTCATGCCTTTGCCCGATGATCGGAAGCCCCCACGAGGGGAAGCCCTCGCTTATCCTGAGGCTGTTCTCCTCGTTGATCCTATAGAGCCCCACTTCAAGGGAGAGGTGGATGACAAGTACCAGTACGGGTGCGAAAGCAAAGAGGCGGGGGTTCACGGGTGGATATCCACCGAGCCGCCCACTGGGCTTTGGCAAATCACACCCAGCCAGGAGAGTCGCTCCGGTGGGCCCCTCAAGCAATTTCTTACCTCCCATGTGGGTCCCACCACCCTTACGGTATTTCATAGCGCGCACTACGCAGGAGAGGATATGGTGATAAAGTTCGGAAGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCTATCTCAATTCCTTGCCTGAAGAAGAAGAGGATCCTCTTAAACTTTGGCAAAATGCTAAAGAACAGATGATGGCTGAAGTTCAAAGCTGGCCTTACAGTTTCCCTGCTTCTGAGGATTTTCTCAAATCAGATCAACGAGGCACTGTCTGTGGCAGATTGATGATCCAAGAGAGATATATGAGCGATGAACCCATGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCCGGAGAAATTGGCTCCTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATGAAAATGGACATTTCTCTTTGAATAATGTTCAAAGTGGAAATTATAGTCTTTATGGATGGGTCCCTAATTTTATTGGAAATTACCAATACAATGCTTCCATCACTGTAAACCCAGGCAGTGATATCAATTTGGATGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTATGGGAAATAGGCATTCCTGATCGTACTGCTGCAGAATTCTATGTACCAGATCCTAATCCTAAGTATATTAACAAACTTTATGTCAATCATTCAGATAAGTTTAGGCAGTATGGATTATGGGAAAGATACACAGAATTATATCCTACCGAGGATCTAGTTTATACAGTTGACCTTAGTGACTACCGAAAAGATTGGTTTTTTGCACAAGTTACCAGGTTTCCTTCCTCAAGATTTTTCTTGCAGTTTTCGTTCATTTTTCAATCATTTTTTGCCTTTAGCAGTATCGTTCACAAATGA 1800 43.78 MSKKLREMKNSTVLPKSLKLFYLFSSFFFCFASFISPITPRHDIASRTGVNGHGPDALAPPLQLCIHEQYVVMDNGIVAVTLSNPKGMVTEIQYNGIDNLLEVANGEDDRGYWDVVWNVAGSAGTKGIFDRIEATDFKVIVENDEQIEVSFSRTYDSSTEENLIPLNIDKRFVMLRNVSGFYSYAIYEHLKEWAAFNIDNTRIVFKPRKDKFGYTAVADERQRFMPLPDDRKPPRGEALAYPEAVLLVDPIEPHFKGEVDDKYQYGCESKEAGVHGWISTEPPTGLWQITPSQESRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVIKFGSNEPWKKVFGPIFIYLNSLPEEEEDPLKLWQNAKEQMMAEVQSWPYSFPASEDFLKSDQRGTVCGRLMIQERYMSDEPMPASGAYVGLALPGEIGSWQTESKGYQFWTRADENGHFSLNNVQSGNYSLYGWVPNFIGNYQYNASITVNPGSDINLDELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDKFRQYGLWERYTELYPTEDLVYTVDLSDYRKDWFFAQVTRFPSSRFFLQFSFIFQSFFAFSSIVHK 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20410113 20423333 + Sed0006943.2 Sed13g1526 735036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1526 599 SUPERFAMILY Galactose-binding domain-like 497 585 IPR008979 -
Sed13g1526 599 FunFam Rhamnogalacturonate lyase B 388 487 - -
Sed13g1526 599 SUPERFAMILY Starch-binding domain-like 389 489 IPR013784 GO:0030246(InterPro)
Sed13g1526 599 CDD RGL4_M 391 487 IPR029413 -
Sed13g1526 599 CDD RGL4_N 70 350 - -
Sed13g1526 599 SUPERFAMILY Galactose mutarotase-like 75 350 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Sed13g1526 599 Gene3D - 388 488 - -
Sed13g1526 599 Pfam Polysaccharide lyase family 4, domain II 414 487 IPR029413 -
Sed13g1526 599 Gene3D - 66 342 IPR014718 GO:0030246(InterPro)
Sed13g1526 599 Pfam Rhamnogalacturonate lyase family 63 259 IPR010325 -
Sed13g1526 599 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 573 IPR051850 -
Sed13g1526 599 Pfam Polysaccharide lyase family 4, domain III 500 573 IPR029411 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1526 Sed-Chr13:20410113 Sed14g1016 Sed-Chr14:19664842 2.30E-173 dispersed
Sed13g1525 Sed-Chr13:20410113 Sed13g1526 Sed-Chr13:20410113 0.00E+00 tandem
Sed13g1526 Sed-Chr13:20410113 Sed13g1527 Sed-Chr13:20423355 3.20E-207 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1526 K18195 - csv:101203789 895.96