Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1527 ATGGCGAACCAAACACTCCAATTGGATATTCATGATCATTATGTTATTATGGACAATGGTATATTGCAAGTGACACTGTCTAAGCCACATGGAAATGTTACGGGGATAAAATACAACAGCCTTGACAATGTGTTAGAAGTTGAGGATAAGGAAGCTCATAGAGGGTACTGGGACCTAGTTTGGAACTCTGGGACTCCAAGACCAACGGGAACGTTCGATGAGATGAGAGCAAAAGAATTTGAAGTGATTATACAAAATGGGGAACAGATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGGAAGTTCCCTTAAACATAGACAAAAGGTACATAATGCTTCGCAACTCCTCTGGATTCTATTCCTATGCCATTTATGAGCACTTGAGGGAATGGCCAGCATTCAACCTTCCTCAAACTAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCATTATATGGCCATAGCAGATAACAGAAAGAGGCTGATGCCACTTCCTGAGGATAGGCTACGTCACAGAGGCAAAGCTTTGGACTTTCCAGAGGCTGTATCTCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAATACCAATATTCTTGTGAAAATAAAGATCTTAAAGTTCATGGATGGATATCCATGGATCCTCCAGTGGGTTTTTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCTCTCAAACAAAATCTCACCTCTCATGTGGGACCATATGCTCTTGCTATGTTTCTTAGCGGCCACTATGCAGGAGAGGACTTGGTGCTGAAGATCAGTCCTTATGAGCCATGGAAGAAAGTGTTTGGCCCTGTATTTTTCTATTTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACCCAGATGACAAAAGAAGTTCAAAGCTGGCCCTATTCTTTTCCCGCTTCTGAGGATTTTCCCCCACCAAAACAACGTGGTAGATTGTCTGGAAAATTATTTGTTTTTGACAGATATGTTAACAAAGAGCAAATGCCAGCAACTGAGGCGTACGTGGGACTGGCAGCACCAGGAGATGCTGGATCATGGCAGGAGGAAAACAAAGGCTACCAGTTTTGGACCAAAACTGATGCAAATGGCTCATTTAGCATTGAAAATATACGCATTGGCGACTACAATCTTTACGCCTGGGTTCCTGGTTTCATTGGCGACTACCGTTACGATGTTACCCTTAACATCTCAGCAGGTAGTGATATGAGCATGGGTGATCTTGTTTATGAGCCGCCAAGGAATGGGCCAACATTGTGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTACCTGATCCTGATCCAAAGTATATTAACAAATTGTATGTCAATCATCCAGATAGATTTAGGCAATATGGATTGTGGGAAAAATATGGGGAGCTATATCCTGTTGCAGACTTGGTTTATACAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCACGTTACCAGAACAAGAAATAATGGATCCCATCAAGCAACCACGTGGGAAATCAAGTTCACAGTTGATGATAATATAGATAAGAGTGGCACCTATACATTGCGACTGGCTCTTGCCACAGCCAATGTTGCCGAGTTACAGATCCAGGTAAACAATCCAGAAGCAAAGCCTGTTCTATTCACAACAGGGCAGATTGGGCACGACAATACAATAGCAAGGCATGGAATTCATGGACTCTATCGACTGTACAACGTTAACATACCTGGATCACTGTTGGTGGAAGGAGACAACAGCATCTTTCTTTCTCAAATTATAAGCAGTTCAGCCTTCAATGGCGTCATGTATGATTATATTCGCCTCGAAGGCCCTCCATCTGATGATGGTGCCCTTACAGATGCATAA 1929 42.3 MANQTLQLDIHDHYVIMDNGILQVTLSKPHGNVTGIKYNSLDNVLEVEDKEAHRGYWDLVWNSGTPRPTGTFDEMRAKEFEVIIQNGEQIELSFKRNYSFKDKEVPLNIDKRYIMLRNSSGFYSYAIYEHLREWPAFNLPQTRIVFKLRKDKFHYMAIADNRKRLMPLPEDRLRHRGKALDFPEAVSLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSGHYAGEDLVLKISPYEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPKQRGRLSGKLFVFDRYVNKEQMPATEAYVGLAAPGDAGSWQEENKGYQFWTKTDANGSFSIENIRIGDYNLYAWVPGFIGDYRYDVTLNISAGSDMSMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYGELYPVADLVYTVGVSDYTKDWFFAHVTRTRNNGSHQATTWEIKFTVDDNIDKSGTYTLRLALATANVAELQIQVNNPEAKPVLFTTGQIGHDNTIARHGIHGLYRLYNVNIPGSLLVEGDNSIFLSQIISSSAFNGVMYDYIRLEGPPSDDGALTDA 642
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 20423355 20432422 + Sed0005181.1 Sed13g1527 735037
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1527 642 CDD RGL4_M 331 430 IPR029413 -
Sed13g1527 642 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
Sed13g1527 642 FunFam Rhamnogalacturonate lyase B 328 427 - -
Sed13g1527 642 Pfam Polysaccharide lyase family 4, domain III 440 629 IPR029411 -
Sed13g1527 642 SUPERFAMILY Galactose-binding domain-like 437 630 IPR008979 -
Sed13g1527 642 Gene3D - 438 630 - -
Sed13g1527 642 Gene3D - 7 282 IPR014718 GO:0030246(InterPro)
Sed13g1527 642 SUPERFAMILY Starch-binding domain-like 330 420 IPR013784 GO:0030246(InterPro)
Sed13g1527 642 Gene3D - 328 427 - -
Sed13g1527 642 CDD RGL4_C 442 630 - -
Sed13g1527 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 IPR051850 -
Sed13g1527 642 CDD RGL4_N 11 301 - -
Sed13g1527 642 Pfam Polysaccharide lyase family 4, domain II 354 424 IPR029413 -
Sed13g1527 642 SUPERFAMILY Galactose mutarotase-like 12 291 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0189 Sed-Chr4:1340280 Sed13g1527 Sed-Chr13:20423355 4.70E-257 dispersed
Sed05g1549 Sed-Chr5:29209913 Sed13g1527 Sed-Chr13:20423355 3.20E-266 dispersed
Sed05g1550 Sed-Chr5:29220105 Sed13g1527 Sed-Chr13:20423355 0.00E+00 dispersed
Sed05g1551 Sed-Chr5:29220105 Sed13g1527 Sed-Chr13:20423355 1.00E-298 dispersed
Sed10g0804 Sed-Chr10:5819657 Sed13g1527 Sed-Chr13:20423355 1.80E-206 dispersed
Sed13g1525 Sed-Chr13:20410113 Sed13g1527 Sed-Chr13:20423355 8.00E-250 dispersed
Sed13g1527 Sed-Chr13:20423355 Sed14g1016 Sed-Chr14:19664842 2.00E-207 dispersed
Sed13g1526 Sed-Chr13:20410113 Sed13g1527 Sed-Chr13:20423355 3.20E-207 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1527 K18195 - csv:101204193 1191.41