Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1527 | ATGGCGAACCAAACACTCCAATTGGATATTCATGATCATTATGTTATTATGGACAATGGTATATTGCAAGTGACACTGTCTAAGCCACATGGAAATGTTACGGGGATAAAATACAACAGCCTTGACAATGTGTTAGAAGTTGAGGATAAGGAAGCTCATAGAGGGTACTGGGACCTAGTTTGGAACTCTGGGACTCCAAGACCAACGGGAACGTTCGATGAGATGAGAGCAAAAGAATTTGAAGTGATTATACAAAATGGGGAACAGATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGGAAGTTCCCTTAAACATAGACAAAAGGTACATAATGCTTCGCAACTCCTCTGGATTCTATTCCTATGCCATTTATGAGCACTTGAGGGAATGGCCAGCATTCAACCTTCCTCAAACTAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCATTATATGGCCATAGCAGATAACAGAAAGAGGCTGATGCCACTTCCTGAGGATAGGCTACGTCACAGAGGCAAAGCTTTGGACTTTCCAGAGGCTGTATCTCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAATACCAATATTCTTGTGAAAATAAAGATCTTAAAGTTCATGGATGGATATCCATGGATCCTCCAGTGGGTTTTTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCTCTCAAACAAAATCTCACCTCTCATGTGGGACCATATGCTCTTGCTATGTTTCTTAGCGGCCACTATGCAGGAGAGGACTTGGTGCTGAAGATCAGTCCTTATGAGCCATGGAAGAAAGTGTTTGGCCCTGTATTTTTCTATTTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACCCAGATGACAAAAGAAGTTCAAAGCTGGCCCTATTCTTTTCCCGCTTCTGAGGATTTTCCCCCACCAAAACAACGTGGTAGATTGTCTGGAAAATTATTTGTTTTTGACAGATATGTTAACAAAGAGCAAATGCCAGCAACTGAGGCGTACGTGGGACTGGCAGCACCAGGAGATGCTGGATCATGGCAGGAGGAAAACAAAGGCTACCAGTTTTGGACCAAAACTGATGCAAATGGCTCATTTAGCATTGAAAATATACGCATTGGCGACTACAATCTTTACGCCTGGGTTCCTGGTTTCATTGGCGACTACCGTTACGATGTTACCCTTAACATCTCAGCAGGTAGTGATATGAGCATGGGTGATCTTGTTTATGAGCCGCCAAGGAATGGGCCAACATTGTGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTACCTGATCCTGATCCAAAGTATATTAACAAATTGTATGTCAATCATCCAGATAGATTTAGGCAATATGGATTGTGGGAAAAATATGGGGAGCTATATCCTGTTGCAGACTTGGTTTATACAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCACGTTACCAGAACAAGAAATAATGGATCCCATCAAGCAACCACGTGGGAAATCAAGTTCACAGTTGATGATAATATAGATAAGAGTGGCACCTATACATTGCGACTGGCTCTTGCCACAGCCAATGTTGCCGAGTTACAGATCCAGGTAAACAATCCAGAAGCAAAGCCTGTTCTATTCACAACAGGGCAGATTGGGCACGACAATACAATAGCAAGGCATGGAATTCATGGACTCTATCGACTGTACAACGTTAACATACCTGGATCACTGTTGGTGGAAGGAGACAACAGCATCTTTCTTTCTCAAATTATAAGCAGTTCAGCCTTCAATGGCGTCATGTATGATTATATTCGCCTCGAAGGCCCTCCATCTGATGATGGTGCCCTTACAGATGCATAA | 1929 | 42.3 | MANQTLQLDIHDHYVIMDNGILQVTLSKPHGNVTGIKYNSLDNVLEVEDKEAHRGYWDLVWNSGTPRPTGTFDEMRAKEFEVIIQNGEQIELSFKRNYSFKDKEVPLNIDKRYIMLRNSSGFYSYAIYEHLREWPAFNLPQTRIVFKLRKDKFHYMAIADNRKRLMPLPEDRLRHRGKALDFPEAVSLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSGHYAGEDLVLKISPYEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPKQRGRLSGKLFVFDRYVNKEQMPATEAYVGLAAPGDAGSWQEENKGYQFWTKTDANGSFSIENIRIGDYNLYAWVPGFIGDYRYDVTLNISAGSDMSMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYGELYPVADLVYTVGVSDYTKDWFFAHVTRTRNNGSHQATTWEIKFTVDDNIDKSGTYTLRLALATANVAELQIQVNNPEAKPVLFTTGQIGHDNTIARHGIHGLYRLYNVNIPGSLLVEGDNSIFLSQIISSSAFNGVMYDYIRLEGPPSDDGALTDA | 642 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 20423355 | 20432422 | + | Sed0005181.1 | Sed13g1527 | 735037 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1527 | 642 | CDD | RGL4_M | 331 | 430 | IPR029413 | - | |
Sed13g1527 | 642 | Pfam | Rhamnogalacturonate lyase family | 3 | 200 | IPR010325 | - | |
Sed13g1527 | 642 | FunFam | Rhamnogalacturonate lyase B | 328 | 427 | - | - | |
Sed13g1527 | 642 | Pfam | Polysaccharide lyase family 4, domain III | 440 | 629 | IPR029411 | - | |
Sed13g1527 | 642 | SUPERFAMILY | Galactose-binding domain-like | 437 | 630 | IPR008979 | - | |
Sed13g1527 | 642 | Gene3D | - | 438 | 630 | - | - | |
Sed13g1527 | 642 | Gene3D | - | 7 | 282 | IPR014718 | GO:0030246(InterPro) | |
Sed13g1527 | 642 | SUPERFAMILY | Starch-binding domain-like | 330 | 420 | IPR013784 | GO:0030246(InterPro) | |
Sed13g1527 | 642 | Gene3D | - | 328 | 427 | - | - | |
Sed13g1527 | 642 | CDD | RGL4_C | 442 | 630 | - | - | |
Sed13g1527 | 642 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 633 | IPR051850 | - | |
Sed13g1527 | 642 | CDD | RGL4_N | 11 | 301 | - | - | |
Sed13g1527 | 642 | Pfam | Polysaccharide lyase family 4, domain II | 354 | 424 | IPR029413 | - | |
Sed13g1527 | 642 | SUPERFAMILY | Galactose mutarotase-like | 12 | 291 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0189 | Sed-Chr4:1340280 | Sed13g1527 | Sed-Chr13:20423355 | 4.70E-257 | dispersed | |
Sed05g1549 | Sed-Chr5:29209913 | Sed13g1527 | Sed-Chr13:20423355 | 3.20E-266 | dispersed | |
Sed05g1550 | Sed-Chr5:29220105 | Sed13g1527 | Sed-Chr13:20423355 | 0.00E+00 | dispersed | |
Sed05g1551 | Sed-Chr5:29220105 | Sed13g1527 | Sed-Chr13:20423355 | 1.00E-298 | dispersed | |
Sed10g0804 | Sed-Chr10:5819657 | Sed13g1527 | Sed-Chr13:20423355 | 1.80E-206 | dispersed | |
Sed13g1525 | Sed-Chr13:20410113 | Sed13g1527 | Sed-Chr13:20423355 | 8.00E-250 | dispersed | |
Sed13g1527 | Sed-Chr13:20423355 | Sed14g1016 | Sed-Chr14:19664842 | 2.00E-207 | dispersed | |
Sed13g1526 | Sed-Chr13:20410113 | Sed13g1527 | Sed-Chr13:20423355 | 3.20E-207 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1527 | K18195 | - | csv:101204193 | 1191.41 |