Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1530 ATGCCGCATAAAACCACTTACTTCTTCCCGAGACAATTTCCGGATCCGGATCGTGCCTCGTCCTCCAAACAAATTGTGAATGGCGAGAAGAAAATCAAGGATGACAGCGACGCGAAACCGACCTCGCTTCGTGATTTCAGCATCTCGAAGAGTTCAGCTGTATCTGATCTTTTCACGGGGGACAAGCCTCAAAGCAACAGCAAGAAACTGCCTGCCTTTTACGATTGGTTGGTGGACAAGAAACCAACCGCTCACGTGAAAAATTGGCTTTCCAATTGCGACGAGGACCGCCAGCTTCTGCTTCCGCCACCTGCCTCCTCGGAGCCGGACCACTACGATGCAACGTCGGTTAAGGATTGGAGTGTCGACCGAAACTTCGACCGGCATGTTTCACTGCCTAGATTATCAAGTGTGAGTAGCTATGCAGGGAGTTTGTTTTCAGGAACGGGAACGGAGACGGGGAATGTGGATGAAAGCTTTTATGGCGACGTCAAGGATACATCGGCATCGAAGATCATGTCGATGCCCGAAGAGATCGGGGTTGAAGACGGTAAGGAAAGCGTAGGACGGAGAGCGAAAGAGAGTTATTGCCTGCAACTGGCTTTGGCTGCAAGGCTTCGTTCCCATGCTAGTCTTGGTGGGGATCCTGTGCTTGTGGAGGATGGCAGAGTTGAAATTACAGATCCTCAAACTGTTTCTTATCGTCTTTGGGTAAGTGGTTGCCTGTCTTACTCAGACAAAATATGTGATGGATTCTACAACATTTTGGGTATGAACCCATATATGTGGGTTATGTGCAATGGCTTTGAGGAAGGTAGAAAATTACCACCTTTGATGTCACTTAAAGCCATTGAACCAAGCGAGTCGCCAATGGAGGTGATTCTTGTCGATAGACGTGGTGACTCGAGACTGAAAGAGCTTGAAGACAAAGCACGAGAACTATATTGTTCTTCAGAGAACACTGTTGTGTTGGTGGAGAAACTAGGAAAACTTGTTGCCATCTACATGGGGGGCAGTTTCCCGGTGGAGCAAGGGGGTTTGCATCTCCATTGGAAAGTGGTGAGCAAAAGAATGAGGGAATTTCAGAATTGCATTGTGCTGCCAATTGGTAGTCTTTCTATGGGACTTTGCAGGCACCGTGCCTTACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGTAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGGCAACAAGTTGTGGAGGGAATATGTAGTTGATTTGGTTGGGCAACCAGGAAATATGCATGGTCCAGATTCTACCATTAATGGAGGGCTTCAATCTTCAATGCCTTCACCACTCCACATTTCTCATTTAAAAGAGTTCCAAGAACCTTATGCAGAAAGTTGTTTAAACCTTCAAACTGTTGGGTCAAAGCAAACATGTGGTTTTCCTGAAATTCCTCTACATTCAGGTATTGAAGAGAACCATATGAAAGGGGTAAGCACTTTACATGAATATTCAAAGGCTGAAACTGATAAATTGGAAGATCAAGCTTGTTGGGGTATGAAATCTCATCTGTGTCTAGAAACTAAACCGAGCAACGAGTGTGTGCTTCAGAATCAGATAATGTCGTCCACCGTCGTCAATGCATCGGAAGCATTGTGTTCTGTTGCTGGTGCATCTTTACATGAAAATAGAGTTGCTATTGAAGAAATATACACAAAAGAAGTAGTTGTGGGAGGAATTTCATTCGATGAAACTAGTATTAATTCGTCCAAATTAAGCTTGGCAACTCAAACTGATTCGAAAGAGGTTGAGGGTCGGTCTCGAAATTGTTCAGCATTGACATATCCAAGATATATGACACTTGAACCATCACTTGCAATGGATTGGCTAGAAATTTCATGGGATGAGTTACATATAAAGGAGCGTGTTGGAGCTGGCTCATTTGGTACAGTACACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAGCCGTGCAGGATTTCCAAGATGATCAGTTAAAAGAGTTTCTAAGAGAGGTTGCGATAATGAAGCGGGTTCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCTAGGGGTAGTCTATATCGCCTAATTCACAGACCATCTTCTAGTGAATTGATAGATCAAAGGAAACGATTGCGAATGGCGTTGGATGTGGCAAAGGGAATCAACTACTTACATTGTCTTAATCCACCAATAGTACATTGGGACCTTAAATCCCCCAATTTGTTGGTTGACAAAAATTGGACAGTGAAGGTTTGTGATTTTGGGTTGTCGAGATTCAAAGCAAACACTTTTATATCATCAAAGTCTGTTGCTGGAACAGCTGAGTGGATGGCTCCAGAGTTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTGGTAACCATGCAACAACCATGGAGTGGGCTTGGTCCGGCTCAGGTTGTGGGAGCTGTGGCTTTCCAGAATAGAAGGCTTTCTATCCCAGCAAGCACTTCTCCATTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGCTCAACGCCCGTCCTTTGCGAGCATAGTCGAGTCCTTAAAGAAATTGCTCAAATCTCCACAGCAGTTAATAGCAATGGGCGGAACGTGA 2739 44.8 MPHKTTYFFPRQFPDPDRASSSKQIVNGEKKIKDDSDAKPTSLRDFSISKSSAVSDLFTGDKPQSNSKKLPAFYDWLVDKKPTAHVKNWLSNCDEDRQLLLPPPASSEPDHYDATSVKDWSVDRNFDRHVSLPRLSSVSSYAGSLFSGTGTETGNVDESFYGDVKDTSASKIMSMPEEIGVEDGKESVGRRAKESYCLQLALAARLRSHASLGGDPVLVEDGRVEITDPQTVSYRLWVSGCLSYSDKICDGFYNILGMNPYMWVMCNGFEEGRKLPPLMSLKAIEPSESPMEVILVDRRGDSRLKELEDKARELYCSSENTVVLVEKLGKLVAIYMGGSFPVEQGGLHLHWKVVSKRMREFQNCIVLPIGSLSMGLCRHRALLFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDGNKLWREYVVDLVGQPGNMHGPDSTINGGLQSSMPSPLHISHLKEFQEPYAESCLNLQTVGSKQTCGFPEIPLHSGIEENHMKGVSTLHEYSKAETDKLEDQACWGMKSHLCLETKPSNECVLQNQIMSSTVVNASEALCSVAGASLHENRVAIEEIYTKEVVVGGISFDETSINSSKLSLATQTDSKEVEGRSRNCSALTYPRYMTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLAVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSSELIDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTAEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPASTSPLLASLIESCWADDPAQRPSFASIVESLKKLLKSPQQLIAMGGT 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20455131 20473096 + Sed0018934.1 Sed13g1530 735040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1530 912 CDD STKc_MAP3K-like 648 896 - -
Sed13g1530 912 PANTHER SERINE-THREONINE PROTEIN KINASE 323 900 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed13g1530 912 MobiDBLite consensus disorder prediction 1 44 - -
Sed13g1530 912 SUPERFAMILY Protein kinase-like (PK-like) 615 895 IPR011009 -
Sed13g1530 912 Pfam Protein tyrosine and serine/threonine kinase 642 896 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 MobiDBLite consensus disorder prediction 27 41 - -
Sed13g1530 912 Gene3D Transferase(Phosphotransferase) domain 1 721 908 - -
Sed13g1530 912 PRINTS Tyrosine kinase catalytic domain signature 804 814 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 PRINTS Tyrosine kinase catalytic domain signature 716 729 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 PRINTS Tyrosine kinase catalytic domain signature 867 889 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 PRINTS Tyrosine kinase catalytic domain signature 823 845 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 PRINTS Tyrosine kinase catalytic domain signature 757 775 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 SMART serkin_6 642 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 Gene3D Phosphorylase Kinase; domain 1 635 719 - -
Sed13g1530 912 FunFam Serine/threonine-protein kinase CTR1 721 906 - -
Sed13g1530 912 ProSitePatterns Protein kinases ATP-binding region signature. 648 669 IPR017441 GO:0005524(InterPro)
Sed13g1530 912 FunFam Serine/threonine-protein kinase isoform 1 632 720 - -
Sed13g1530 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 ProSiteProfiles Protein kinase domain profile. 642 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1530 912 Pfam Ethylene-responsive protein kinase Le-CTR1 230 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1836 Sed-Chr11:33151905 Sed13g1530 Sed-Chr13:20455131 2.60E-115 dispersed
Sed12g2319 Sed-Chr12:33269593 Sed13g1530 Sed-Chr13:20455131 2.20E-47 dispersed
Sed12g2320 Sed-Chr12:33269593 Sed13g1530 Sed-Chr13:20455131 2.20E-47 dispersed
Sed13g1530 Sed-Chr13:20455131 Sed14g0330 Sed-Chr14:3397525 2.50E-163 dispersed
Sed14g1459 Sed-Chr14:23070659 Sed13g1530 Sed-Chr13:20455131 2.00E-42 dispersed
Sed13g1530 Sed-Chr13:20455131 Sed13g1531 Sed-Chr13:20455131 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80102 PF07714 PK_Tyr_Ser-Thr 4.50E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1530 - - - 0.0