Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1531 | ATGCCGCATAAAACCACTTACTTCTTCCCGAGACAATTTCCGGATCCGGATCGTGCCTCGTCCTCCAAACAAATTGTGAATGGCGAGAAGAAAATCAAGGATGACAGCGACGCGAAACCGACCTCGCTTCGTGATTTCAGCATCTCGAAGAGTTCAGCTGTATCTGATCTTTTCACGGGGGACAAGCCTCAAAGCAACAGCAAGAAACTGCCTGCCTTTTACGATTGGTTGGTGGACAAGAAACCAACCGCTCACGTGAAAAATTGGCTTTCCAATTGCGACGAGGACCGCCAGCTTCTGCTTCCGCCACCTGCCTCCTCGGAGCCGGACCACTACGATGCAACGTCGGTTAAGGATTGGAGTGTCGACCGAAACTTCGACCGGCATGTTTCACTGCCTAGATTATCAAGTGTGAGTAGCTATGCAGGGAGTTTGTTTTCAGGAACGGGAACGGAGACGGGGAATGTGGATGAAAGCTTTTATGGCGACGTCAAGGATACATCGGCATCGAAGATCATGTCGATGCCCGAAGAGATCGGGGTTGAAGACGGTAAGGAAAGCGTAGGACGGAGAGCGAAAGAGAGTTATTGCCTGCAACTGGCTTTGGCTGCAAGGCTTCGTTCCCATGCTAGTCTTGGTGGGGATCCTGTGCTTGTGGAGGATGGCAGAGTTGAAATTACAGATCCTCAAACTGTTTCTTATCGTCTTTGGGTAAGTGGTTGCCTGTCTTACTCAGACAAAATATGTGATGGATTCTACAACATTTTGGGTATGAACCCATATATGTGGGTTATGTGCAATGGCTTTGAGGAAGGTAGAAAATTACCACCTTTGATGTCACTTAAAGCCATTGAACCAAGCGAGTCGCCAATGGAGGTGATTCTTGTCGATAGACGTGGTGACTCGAGACTGAAAGAGCTTGAAGACAAAGCACGAGAACTATATTGTTCTTCAGAGAACACTGTTGTGTTGGTGGAGAAACTAGGAAAACTTGTTGCCATCTACATGGGGGGCAGTTTCCCGGTGGAGCAAGGGGGTTTGCATCTCCATTGGAAAGTGGTGAGCAAAAGAATGAGGGAATTTCAGAATTGCATTGTGCTGCCAATTGGTAGTCTTTCTATGGGACTTTGCAGGCACCGTGCCTTACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGTAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGGCAACAAGTTGTGGAGGGAATATGTAGTTGATTTGGTTGGGCAACCAGGAAATATGCATGGTCCAGATTCTACCATTAATGGAGGGCTTCAATCTTCAATGCCTTCACCACTCCACATTTCTCATTTAAAAGAGTTCCAAGAACCTTATGCAGAAAGTTGTTTAAACCTTCAAACTGTTGGGTCAAAGCAAACATGTGGTTTTCCTGAAATTCCTCTACATTCAGGTATTGAAGAGAACCATATGAAAGGGGTAAGCACTTTACATGAATATTCAAAGGCTGAAACTGATAAATTGGAAGATCAAGCTTGTTGGGGTATGAAATCTCATCTGTGTCTAGAAACTAAACCGAGCAACGAGTGTGTGCTTCAGAATCAGATAATGTCGTCCACCGTCGTCAATGCATCGGAAGCATTGTGTTCTGTTGCTGGTGCATCTTTACATGAAAATAGAGTTGCTATTGAAGAAATATACACAAAAGAAGTAGTTGTGGGAGGAATTTCATTCGATGAAACTAGTATTAATTCGTCCAAATTAAGCTTGGCAACTCAAACTGATTCGAAAGAGGTTGAGGGTCGGTCTCGAAATTGTTCAGCATTGACATATCCAAGATATATGACACTTGAACCATCACTTGCAATGGATTGGCTAGAAATTTCATGGGATGAGTTACATATAAAGGAGCGTGTTGGAGCTGGCTCATTTGGTACAGTACACCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAGCCGTGCAGGATTTCCAAGATGATCAGTTAAAAGAGTTTCTAAGAGAGGTTGCGATAATGAAGCGGGTTCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCTAGGGGTAGTCTATATCGCCTAATTCACAGACCATCTTCTAGTGAATTGATAGATCAAAGGAAACGATTGCGAATGGCGTTGGATGTGGCAAAGGGAATCAACTACTTACATTGTCTTAATCCACCAATAGTACATTGGGACCTTAAATCCCCCAATTTGTTGGTTGACAAAAATTGGACAGTGAAGGTTTGTGATTTTGGGTTGTCGAGATTCAAAGCAAACACTTTTATATCATCAAAGTCTGTTGCTGGAACAGCTGAGTGGATGGCTCCAGAGTTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTGGTAACCATGCAACAACCATGGAGTGGGCTTGGTCCGGCTCAGGTTGTGGGAGCTGTGGCTTTCCAGAATAGAAGGCTTTCTATCCCAGCAAGCACTTCTCCATTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGCTCAACGCCCGTCCTTTGCGAGCATAGTCGAGTCCTTAAAGAAATTGCTCAAATCTCCACAGCAGTTAATAGCAATGGGCGGAACGTGA | 2739 | 44.8 | MPHKTTYFFPRQFPDPDRASSSKQIVNGEKKIKDDSDAKPTSLRDFSISKSSAVSDLFTGDKPQSNSKKLPAFYDWLVDKKPTAHVKNWLSNCDEDRQLLLPPPASSEPDHYDATSVKDWSVDRNFDRHVSLPRLSSVSSYAGSLFSGTGTETGNVDESFYGDVKDTSASKIMSMPEEIGVEDGKESVGRRAKESYCLQLALAARLRSHASLGGDPVLVEDGRVEITDPQTVSYRLWVSGCLSYSDKICDGFYNILGMNPYMWVMCNGFEEGRKLPPLMSLKAIEPSESPMEVILVDRRGDSRLKELEDKARELYCSSENTVVLVEKLGKLVAIYMGGSFPVEQGGLHLHWKVVSKRMREFQNCIVLPIGSLSMGLCRHRALLFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDGNKLWREYVVDLVGQPGNMHGPDSTINGGLQSSMPSPLHISHLKEFQEPYAESCLNLQTVGSKQTCGFPEIPLHSGIEENHMKGVSTLHEYSKAETDKLEDQACWGMKSHLCLETKPSNECVLQNQIMSSTVVNASEALCSVAGASLHENRVAIEEIYTKEVVVGGISFDETSINSSKLSLATQTDSKEVEGRSRNCSALTYPRYMTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLAVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSSELIDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTAEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPASTSPLLASLIESCWADDPAQRPSFASIVESLKKLLKSPQQLIAMGGT | 912 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 20455131 | 20473096 | + | Sed0018934.2 | Sed13g1531 | 735041 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1531 | 912 | CDD | STKc_MAP3K-like | 648 | 896 | - | - | |
Sed13g1531 | 912 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 323 | 900 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed13g1531 | 912 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Sed13g1531 | 912 | SUPERFAMILY | Protein kinase-like (PK-like) | 615 | 895 | IPR011009 | - | |
Sed13g1531 | 912 | Pfam | Protein tyrosine and serine/threonine kinase | 642 | 896 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | MobiDBLite | consensus disorder prediction | 27 | 41 | - | - | |
Sed13g1531 | 912 | Gene3D | Transferase(Phosphotransferase) domain 1 | 721 | 908 | - | - | |
Sed13g1531 | 912 | PRINTS | Tyrosine kinase catalytic domain signature | 804 | 814 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | PRINTS | Tyrosine kinase catalytic domain signature | 716 | 729 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | PRINTS | Tyrosine kinase catalytic domain signature | 867 | 889 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | PRINTS | Tyrosine kinase catalytic domain signature | 823 | 845 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | PRINTS | Tyrosine kinase catalytic domain signature | 757 | 775 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | SMART | serkin_6 | 642 | 900 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | Gene3D | Phosphorylase Kinase; domain 1 | 635 | 719 | - | - | |
Sed13g1531 | 912 | FunFam | Serine/threonine-protein kinase CTR1 | 721 | 906 | - | - | |
Sed13g1531 | 912 | ProSitePatterns | Protein kinases ATP-binding region signature. | 648 | 669 | IPR017441 | GO:0005524(InterPro) | |
Sed13g1531 | 912 | FunFam | Serine/threonine-protein kinase isoform 1 | 632 | 720 | - | - | |
Sed13g1531 | 912 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 763 | 775 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | ProSiteProfiles | Protein kinase domain profile. | 642 | 900 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1531 | 912 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 230 | 437 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed13g1531 | Sed-Chr13:20455131 | Sed14g0330 | Sed-Chr14:3397525 | 2.50E-163 | dispersed | |
Sed13g1530 | Sed-Chr13:20455131 | Sed13g1531 | Sed-Chr13:20455131 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80103 | PF07714 | PK_Tyr_Ser-Thr | 4.50E-65 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1531 | - | - | - | 0.0 |