Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1545 ATGGCTTGCAAGTTTCTATTTCCTCCCTTTTTATTTTTAATACTTTTAACCCTTTTCATCTCTTCATCTAATGCAGATGATTCTCTCACAAATTTCTTCCCTTCAAAATCCATTTGCAAATTCACCTCAAATCCTTCTTACTGCATCTCTGAGCTTCAAAAATCCACAGGAAGCATCTATAACTCCGGTCGGTTTTCGATGCGTCGGTCTTCATCGAAAGCATCTACATTCTTTAACTTGGTCAAGGACCACCTTCAAAACAGTTCCGCTCTCCCAAAATCCGTCACCGGAGCTCTTGAAGATTGCCAATATCTAGCCCAACTAAACATCAACTTCTTGTCGAACTCGTTTCGGGCCGTAAATGGCACGGACCAAAAGCTTACATACTCGAAAGCCGATTACATCCAGAGTCTTTTAAGTGCCATTTTAACCAACATTGATACTTGTCTTGATGGCCTAAAAACAGTAGCCTCAGATTCCAATTTGGAAAAAGATTTATTAGCTCCATTGATTGATTGTACCAAATCATACAGTCTTTCACTAGATCTTTTCACAAAAGGTTGGGTTCCTAGAAACAGAACACTTGGTCACTCTGGGAGAAAACATCCCAAGTTTCGGAAAGGCCCGATACCGTTGAGGATGTCGGGACGGGACCGTGCGGTTTTCAACGCGGTGACGAATCGAAGACAGCTTTCGTCGTCGGATGATGATGGAATTTTGGTCAATGGTATTGTTGTTGTGAGTCAGGATGGGACAGGGAATTTCCTTACCATTACAGAAGCTGTTAATGCTGCTCCAAATAACTCTGTTGCTAAAAATGGATACTTTTTGATTTACATCACTGCTGGTGTTTATCAAGAGTATGTGTCTGTTCCTACAAAGAAGAAGTATTTGTTGATGATTGGAGATGGTATTAATCAGACTGTCGTTACCGGTAACCGGAGCGTCGTTGACGGGTGGACGACGTTTAATAGTGCAACTTTTGCTGTGGCAGCCGAAGGATTCATGGCAGTGAACATAACCTTCCAAAACACAGCCGGAGCGATCAAAGGCCAAGCCGTAGCACTTCGAAGCGGGGCCGACATGTCGATCTTCTACAGCTGCAGCTTCGAGGGCTACCAAGACACCTTATACACTCACTCCCTCCGACAGTTCTTCCGAGAATGCGACATCTACGGCACCGTCGACTTCATATTCGGAAACGCAGCCGTCGTGTTTCAAAACTGTAACATATATCCCCGCCTACCCCGTCCGGGGCAGAGCAACATGATCACAGCACAAGGGCGGTCAGACCCGAACCAGAACACCGGGACGTCGATCGACAACTGCACGATCCGAGCCACGAGCGATTTGGCGGCAAGCAAAAGCTACTTCAACAAGACATATTTGGGAAGGCCATGGAAGCCATATTCAAGAACAGTTTATATGCAGAGTTTTATTGATGGATTTATAAATCCTGGTGGTTGGGATCCATGGTCAGGGGAATATTTGAGCACATTATATTATGGAGAATATAATAACACTGGAATTGGATCAAATACAAATAATAGAGTTAAATGGCCTGGTTATCATGTGATTAATAATGTTACTGAAGCTGCTAATTTTACAGTTTCTAATTTTCTTGTTGGTGATGCTTGGTTGCCTCCAACTGGTGTGCCTTACACTGGAGGCTTCAAATAA 1680 43.63 MACKFLFPPFLFLILLTLFISSSNADDSLTNFFPSKSICKFTSNPSYCISELQKSTGSIYNSGRFSMRRSSSKASTFFNLVKDHLQNSSALPKSVTGALEDCQYLAQLNINFLSNSFRAVNGTDQKLTYSKADYIQSLLSAILTNIDTCLDGLKTVASDSNLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRNRTLGHSGRKHPKFRKGPIPLRMSGRDRAVFNAVTNRRQLSSSDDDGILVNGIVVVSQDGTGNFLTITEAVNAAPNNSVAKNGYFLIYITAGVYQEYVSVPTKKKYLLMIGDGINQTVVTGNRSVVDGWTTFNSATFAVAAEGFMAVNITFQNTAGAIKGQAVALRSGADMSIFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRPGQSNMITAQGRSDPNQNTGTSIDNCTIRATSDLAASKSYFNKTYLGRPWKPYSRTVYMQSFIDGFINPGGWDPWSGEYLSTLYYGEYNNTGIGSNTNNRVKWPGYHVINNVTEAANFTVSNFLVGDAWLPPTGVPYTGGFK 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20633207 20636504 + Sed0009394.1 Sed13g1545 735055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1545 559 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Sed13g1545 559 FunFam Pectinesterase 240 558 - -
Sed13g1545 559 SUPERFAMILY Pectin lyase-like 241 557 IPR011050 -
Sed13g1545 559 CDD PMEI-like_3 37 188 - -
Sed13g1545 559 Pfam Pectinesterase 245 544 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed13g1545 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 186 IPR035513 -
Sed13g1545 559 Gene3D - 241 558 IPR012334 -
Sed13g1545 559 PANTHER PECTINESTERASE 13 549 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed13g1545 559 SMART PMEI_2 28 183 IPR006501 GO:0004857(InterPro)
Sed13g1545 559 Pfam Plant invertase/pectin methylesterase inhibitor 36 182 IPR006501 GO:0004857(InterPro)
Sed13g1545 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 186 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0564 Sed-Chr7:4232363 Sed13g1545 Sed-Chr13:20633207 7.00E-172 dispersed
Sed07g2158 Sed-Chr7:37136117 Sed13g1545 Sed-Chr13:20633207 1.60E-129 dispersed
Sed08g2532 Sed-Chr8:38031839 Sed13g1545 Sed-Chr13:20633207 1.10E-74 dispersed
Sed13g1545 Sed-Chr13:20633207 Sed14g1360 Sed-Chr14:22453067 2.60E-102 dispersed
Sed13g1545 Sed-Chr13:20633207 Sed01g3493 Sed-Chr1:64019311 9.30E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1545 K01051 - csv:101205879 950.273