Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1547 ATGTCGGCTTCGTGGGAAGACAATTCTACCGGCTCCGATCATCAACATTCCCACATCAATTTCGATTTCTTCTCCGCCATTGTTAAGCCCAAGGACTACTACAAAATTTTGGAGGTCGATTGCGATGCTACCGACGATGAAATCCGTTCCAATTACATTCGATTGGCTTTGAAATGGCATCCTGATAAGCAGAAAGAGCACAACGGTGCCACTTCCAGATTTCAGGATATAAACGAGGCATATCAAGTTTTAAGTGATCCTTCTAGAAGGCAGGAATATGACGAGCATGGGATGCTCTATGTAAATGATGATAACATAATGGATTATCTCAAGCGACACAAAGGCCTTATTTTGACTTGTAATGGCCTCGGTATGAAGTACTCAATTTGGTGA 393 42.24 MSASWEDNSTGSDHQHSHINFDFFSAIVKPKDYYKILEVDCDATDDEIRSNYIRLALKWHPDKQKEHNGATSRFQDINEAYQVLSDPSRRQEYDEHGMLYVNDDNIMDYLKRHKGLILTCNGLGMKYSIW 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20652808 20655990 + Sed0003078.1 Sed13g1547 735057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1547 130 ProSitePatterns Nt-dnaJ domain signature. 74 93 IPR018253 -
Sed13g1547 130 CDD DnaJ 32 86 IPR001623 -
Sed13g1547 130 SUPERFAMILY Chaperone J-domain 27 110 IPR036869 -
Sed13g1547 130 Gene3D DnaJ domain 24 111 IPR036869 -
Sed13g1547 130 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 130 - GO:0005634(PANTHER)|GO:0005737(PANTHER)
Sed13g1547 130 Pfam DnaJ domain 32 94 IPR001623 -
Sed13g1547 130 SMART dnaj_3 31 89 IPR001623 -
Sed13g1547 130 PRINTS DnaJ domain signature 52 67 IPR001623 -
Sed13g1547 130 PRINTS DnaJ domain signature 89 108 IPR001623 -
Sed13g1547 130 PRINTS DnaJ domain signature 34 52 IPR001623 -
Sed13g1547 130 PRINTS DnaJ domain signature 69 89 IPR001623 -
Sed13g1547 130 FunFam Chaperone protein DNAj, putative 24 111 - -
Sed13g1547 130 ProSiteProfiles dnaJ domain profile. 32 97 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1547 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0226 Sed-Chr4:1641772 Sed13g1547 Sed-Chr13:20652808 1.20E-33 dispersed
Sed13g1547 Sed-Chr13:20652808 Sed14g1486 Sed-Chr14:23214149 2.80E-15 dispersed
Sed13g1547 Sed-Chr13:20652808 Sed04g0225 Sed-Chr4:1641772 2.00E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g487 . . . . . . . . . Cmo12g00144 Cma01g01638 . . Car12g00169 . . Cpe07g00157 . . . . . . . . . . . . . . . . . . Lsi04g02272 Csa03g04483 Chy04g00217 . . . . . . . . Bma02g00106 Sed13g1547 Cmo01g01685 . Cma12g00186 . . . . . Bhi09g02487 Tan01g3840 Cmetu04g2532 . Hepe01g2162 Mch11g0701 . Cla11g01415 Cam11g1472 Cec11g1502 Cco11g1497 Clacu11g1633 Cmu11g1451 Cre11g1869 . . . Cme04g00245
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002065 3 2 1 1 2 1 3 2 2 2 2 1 3 2 1 3 1 4 3 1 2 2 2 2 2 2 2 4 2 2 62