Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1555 ATGGTGACCGTTTCCGATTCTGATCACCGTTCATCCACCGGAACTGAGTTTTCCGGCGAAAATCTCAACAGCGAGGTACGGCCGGATAATCATCAGCCTCGTTGGGCTCAAGTCGTCCGAGGAGAGTCGGATTCAATCTCATCCGTCGATCGGTCTCTGCCGCCGTCGGCATCAGTTTCTGCTCCGTCTGAGAATGACAGTAATGCAATGGATAGGAAGAAACAGGCTTGGAAAAAGGCTTCGAATGGCGTCCTCGACGCCGATGGTGGTTCTGTAATGGGGGCAGATGCTTGGCCTGCTCTCGTGGAGTCTGCGAGGTCTTCGCCTAAATTAGTAGCCGATTCTCCTCTCAAACCTACTGGTGAAGTACCAGTTCCCCCTGCTGCTCAGGGATCTATCAATTTACCCCCTCAACGGCAAGCTACAAATAATGCCAAATCAAACCACAGCCTGAAACAACCACTGGTTGCTCGACAAAGATCCTCGAGGCGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGCTCAATGGGAAGCCCTGCACGAGTTTTTTATCACCCCTTGACACCGCCACCGCCACCGCCTTTTCCTGTATTTCAAATGGCTGGTAGTAGTTATTATAATGTGACACCAGCAATAATTGATCCTTTTCCTGGAAACCCATTATTCAGTAGCAGCAATATTTGGGATCCACGGCCAGTTGCAGGGTTTATGCCTCAGACAAATTTTGCTACTGATCAACGCAACTTTTTTCCTATGGAGAATTTAGCTTTCCATCCTCATGGTGGTAGTCACTACTACCATACCAATCCTGGGAGAAAGCGTGATCACGATCGTAGAGTGTATCCTAATGTTCAAGATGCTCGTTTTCAGAACCACATGCCCCCTCCTAGAGGCTTTATGAGTCCTTCACCACCTTACATTTCTCAGTTGCCCCAACATGTTAGACCTCATGGGAATCCTATTCCTCCTCCTCCTCCTGAGTTTGTCTATGCCCCTGCATATCCCATGGAGCCTTACACCGGCATGCCTCCAATGCCACCCATGCCGCATTACCATTTTGCCATGGATCCCACGCTATCTGCAAACCTAGTTTATCAGATTGAATATTATTTCAGTGACGACAATTTGATCAAGGATCCATATTTAAGGTCCAAAATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCTGGCTTTTCTGAAATACAGAAATTGACAAGTAATATTCGATTGATCGTGGAAGCCTTGAGAACTTCAACGGAAGTGGAAGTGCAGGATTATAGAATTAGAAAACGAAATGAATGGATGAAATGGCCATTACATATTAATCAGATTAGAAATGATTCGTCCTTCTCTACACCAAATATGTATGACAAATGA 1389 46.8 MVTVSDSDHRSSTGTEFSGENLNSEVRPDNHQPRWAQVVRGESDSISSVDRSLPPSASVSAPSENDSNAMDRKKQAWKKASNGVLDADGGSVMGADAWPALVESARSSPKLVADSPLKPTGEVPVPPAAQGSINLPPQRQATNNAKSNHSLKQPLVARQRSSRRGGGGGGGGGGGSSMGSPARVFYHPLTPPPPPPFPVFQMAGSSYYNVTPAIIDPFPGNPLFSSSNIWDPRPVAGFMPQTNFATDQRNFFPMENLAFHPHGGSHYYHTNPGRKRDHDRRVYPNVQDARFQNHMPPPRGFMSPSPPYISQLPQHVRPHGNPIPPPPPEFVYAPAYPMEPYTGMPPMPPMPHYHFAMDPTLSANLVYQIEYYFSDDNLIKDPYLRSKMDDQGWVPISLIAGFSEIQKLTSNIRLIVEALRTSTEVEVQDYRIRKRNEWMKWPLHINQIRNDSSFSTPNMYDK 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20761146 20764546 + Sed0024981.1 Sed13g1555 735065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1555 462 PANTHER LUPUS LA PROTEIN-RELATED 126 449 IPR045180 GO:0003723(PANTHER)
Sed13g1555 462 MobiDBLite consensus disorder prediction 133 157 - -
Sed13g1555 462 MobiDBLite consensus disorder prediction 1 187 - -
Sed13g1555 462 FunFam la-related protein 1B isoform X2 352 441 - -
Sed13g1555 462 MobiDBLite consensus disorder prediction 41 66 - -
Sed13g1555 462 SUPERFAMILY Winged helix DNA-binding domain 353 446 IPR036390 -
Sed13g1555 462 SMART la 359 437 IPR006630 -
Sed13g1555 462 ProSiteProfiles La-type HTH domain profile. 355 445 IPR006630 -
Sed13g1555 462 Gene3D - 355 442 IPR036388 -
Sed13g1555 462 Pfam La domain 366 420 IPR006630 -
Sed13g1555 462 CDD LAM 363 434 - -
Sed13g1555 462 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1555 K18757 - - csv:101220887 450.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1555 Sed-Chr13:20761146 Sed14g1211 Sed-Chr14:21350013 3.60E-33 dispersed
Sed13g1555 Sed-Chr13:20761146 Sed13g1556 Sed-Chr13:20761146 9.70E-220 tandem
Sed10g1025 Sed-Chr10:8946731 Sed13g1555 Sed-Chr13:20761146 1.50E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44