Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1561 ATGGCTACATTAGTTCCATTCATATTATATCTCCTAACAATCCAAATTTCAATATCAGCTGTATTATCCACGACTTTCAGCATAGTAAATAAATGTGATTACACCGTCTGGCCAGGAATTCTCTCAAACGCCGGCGTTCCTCCGCTTCCCACCACCGGCTTCGTCCTCGCCGCCGGCGAATCCCAAACCCTCTCCGCTCCGCAGTCTTGGGGCGGCCGGTTCTGGGGCCGGACCCACTGCTCCCAAGACTCTGCCGGAAAACTCACCTGTCTCACCGCCGACTGCGGCTCCGGCACCGTCGAGTGCGGCGGCGCCGGCGCGAAACCGCCGGCAACTCTAGCGGAGTTCACCCTCGACGGCGCCGGCGGGTTGGATTTCTTCGACGTGAGTTTGGTGGACGGCTACAACATCCCCATGCTGGTGGTCCCACAGGGCGGCTCCGGCGAGAAATGCGCCGCCACCGGCTGCGTCGTGGATTTGAACGGCGCGTGTCCTTCGGAGCTGAAGGTCACGCGCGTGGGCGGCGGAGAGGGCGTCGCGTGTAGAAGCGCGTGCGAAGCGTTCAACGAACCGCAGTTCTGTTGCAGCGGCGCGTACGCGACTCCGGATACGTGCAAGCCGTCGGCGTACTCGCAGGCGTTTAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGATGATTTAACCAGCACGTTCACGTGTTTGGATGCGGATTATATCATCACATTCTGCCCCTTGCCAAACACTAGTCAAAAAACAACGGAAAGCCACAACACAAACACGCCGGCGACTAACGGCGGCAACGGCACAATGGTTTACGAAGGGGCGGAGTTTGATCTAAGCGGCGCGTCGAGAACAACGCTCCGCCGTATTCTCGGCGTGGTTGTTGCCACGCTGGCAGTCCTCGTTGGAGTAGGCCCATTACCTTTCTAG 936 58.65 MATLVPFILYLLTIQISISAVLSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESQTLSAPQSWGGRFWGRTHCSQDSAGKLTCLTADCGSGTVECGGAGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGSGEKCAATGCVVDLNGACPSELKVTRVGGGEGVACRSACEAFNEPQFCCSGAYATPDTCKPSAYSQAFKNACPRAYSYAYDDLTSTFTCLDADYIITFCPLPNTSQKTTESHNTNTPATNGGNGTMVYEGAEFDLSGASRTTLRRILGVVVATLAVLVGVGPLPF 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20815333 20817788 - Sed0017458.1 Sed13g1561 735071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1561 311 Gene3D Thaumatin 24 246 IPR037176 -
Sed13g1561 311 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Sed13g1561 311 PIRSF PR5 1 280 IPR001938 -
Sed13g1561 311 Pfam Thaumatin family 30 246 IPR001938 -
Sed13g1561 311 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Sed13g1561 311 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Sed13g1561 311 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Sed13g1561 311 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Sed13g1561 311 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Sed13g1561 311 SMART tha2 26 246 IPR001938 -
Sed13g1561 311 PANTHER OS03G0233200 PROTEIN 10 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Sed13g1561 311 CDD TLP-PA 25 245 - -
Sed13g1561 311 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0951 Sed-Chr4:10991306 Sed13g1561 Sed-Chr13:20815333 6.90E-86 dispersed
Sed11g1093 Sed-Chr11:26594580 Sed13g1561 Sed-Chr13:20815333 4.90E-114 dispersed
Sed11g1094 Sed-Chr11:26594580 Sed13g1561 Sed-Chr13:20815333 4.90E-114 dispersed
Sed11g1095 Sed-Chr11:26641908 Sed13g1561 Sed-Chr13:20815333 1.40E-73 dispersed
Sed13g0008 Sed-Chr13:55953 Sed13g1561 Sed-Chr13:20815333 5.60E-75 dispersed
Sed13g1561 Sed-Chr13:20815333 Sed14g0361 Sed-Chr14:3752296 3.20E-65 dispersed
Sed13g1561 Sed-Chr13:20815333 Sed13g1562 Sed-Chr13:20815333 4.10E-145 tandem
Sed01g2481 Sed-Chr1:18564854 Sed13g1561 Sed-Chr13:20815333 1.80E-153 wgd
Sed10g1004 Sed-Chr10:8748061 Sed13g1561 Sed-Chr13:20815333 1.10E-79 wgd
Sed11g1092 Sed-Chr11:26594580 Sed13g1561 Sed-Chr13:20815333 8.40E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1561 - - - 0.0