Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1562 ATGGCTACATTAGTTCCATTCATATTATATCTCCTAACAATCCAAATTTCAATATCAGCTGTATTATCCACGACTTTCAGCATAGTAAATAAATGTGATTACACCGTCTGGCCAGGAATTCTCTCAAACGCCGGCGTTCCTCCGCTTCCCACCACCGGCTTCGTCCTCGCCGCCGGCGAATCCCAAACCCTCTCCGCTCCGCAGTCTTGGGGCGGCCGGTTCTGGGGCCGGACCCACTGCTCCCAAGACTCTGCCGGAAAACTCACCTGTCTCACCGCCGACTGCGGCTCCGGCACCGTCGAGTGCGGCGGCGCCGGCGCGAAACCGCCGGCAACTCTAGCGGAGTTCACCCTCGACGGCGCCGGCGGGTTGGATTTCTTCGACGTGAGTTTGGTGGACGGCTACAACATCCCCATGCTGGTGGTCCCACAGGGCGGCTCCGGCGAGAAATGCGCCGCCACCGGCTGCGTCGTGGATTTGAACGGCGCGTGTCCTTCGGAGCTGAAGGTCACGCGCGTGGGCGGCGGAGAGGGCGTCGCGTGTAGAAGCGCGTGCGAAGCGTTCAACGAACCGCAGTTCTGTTGCAGCGGCGCGTACGCGACTCCGGATACGTGCAAGCCGTCGGCGTACTCGCAGGCGTTTAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGATGATTTAACCAGCACGTTCACGTGTTTGGATGCGGATTATATCATCACATTCTGCCCCTTGCCAAACACTAGGTATATTTACGCAATTCTCCCCCTTGACTTTCGCTCATTTTCCTTATTTTTCAAGTTAAAGTTTAAGGGCATTTTCGTACATTTGGAGTTGACAAAATTCATGGAATTTGAAGCTATCATGCTTTTTCAAGACAGAAGGAATCTCGTTCATCAATGTATATGCCACGTAGGATCAGCAGGGGTATTTTGGTAA 945 54.6 MATLVPFILYLLTIQISISAVLSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESQTLSAPQSWGGRFWGRTHCSQDSAGKLTCLTADCGSGTVECGGAGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGSGEKCAATGCVVDLNGACPSELKVTRVGGGEGVACRSACEAFNEPQFCCSGAYATPDTCKPSAYSQAFKNACPRAYSYAYDDLTSTFTCLDADYIITFCPLPNTRYIYAILPLDFRSFSLFFKLKFKGIFVHLELTKFMEFEAIMLFQDRRNLVHQCICHVGSAGVFW 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20815333 20817788 - Sed0017458.2 Sed13g1562 735072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1562 314 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Sed13g1562 314 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Sed13g1562 314 PANTHER OS03G0233200 PROTEIN 10 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Sed13g1562 314 SMART tha2 26 246 IPR001938 -
Sed13g1562 314 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
Sed13g1562 314 Gene3D Thaumatin 24 246 IPR037176 -
Sed13g1562 314 Pfam Thaumatin family 30 246 IPR001938 -
Sed13g1562 314 CDD TLP-PA 25 245 - -
Sed13g1562 314 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Sed13g1562 314 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Sed13g1562 314 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Sed13g1562 314 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2481 Sed-Chr1:18564854 Sed13g1562 Sed-Chr13:20815333 1.10E-129 dispersed
Sed01g2482 Sed-Chr1:18564854 Sed13g1562 Sed-Chr13:20815333 1.70E-130 dispersed
Sed13g1562 Sed-Chr13:20815333 Sed14g0361 Sed-Chr14:3752296 4.20E-65 dispersed
Sed13g1561 Sed-Chr13:20815333 Sed13g1562 Sed-Chr13:20815333 4.10E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1562 - - - 0.0