Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1574 ATGTCGATCGCCGCCGCACCAGCCGCCGTCAGATCATTTTCTCCGGTCAGATCTCCGCCGTCGATGGGCCTGCCTCGCTCCACCATGGCCATCCGATCCAAAGCGGTCTCTGTTTCCCCAATTTTGACCAAGTTTCAGAAAGATTGCGAAACCCCATTGCCGGTTTTGCGCCACGTGGCCGATTCAATGGCCGACGATATGCGGGCTGGGCTCGCCGTCGACGGCGGCGGCGGCGGCGATCTCGAAATGATTCTCAGTTATGTGGACACTCTGCCAAGTGGGGATGAGAAAGGGTTGTTTTATGGATTGGATCTTGGTGGGACTAACTTTAGAGTGCTTAGAGTTCAATTGGGTGGCAAAGAAGATCGTGTAATTGCCACTGAATTTCAGCAACTTTCAATCCCTAAACACCTTAAGTTTGCTACATCTCAGGAGCTCTTTGATTTCATGGCTTCTGGTCTGCAAAAATTTGTAGAAAAAGAAGGTGACAGATTCCACCTCTCCCATGGAAGAAAGAGAGAGATTGGATTCACATTCTCATTCCCAGTGAAACAAACTTCAATTGACTCTGGCATATTAATCAAGTGGACTAAAGGTTTTGCTGTTTCTGGAATGCCAGGAAATGATGTTGTTTCTTGCCTAAATGAAGCCATGCAAAGGCGAGGACTAGATATGCACGTTTCGGCCCTTGTTAACGATGCGGTTGGAACGTTGGCTGGAGCAAGATACAACGACAAAGATGTCGTGGCTGGTGTGATTTTAGGGACAGGAACCAATGCCTGTTATATCGAACGAAAGGATGCTATTCCTAAGCTGCAAGGCCATTCATCTTCTTCCGGGAAAACAATTATCAACACAGAGTGGGGAGCATATAAAAAAGGTCTTCCTCTTACTGTTTTTGATAGAGAGATGGATGCTGCCAGTATCAATCCAGGGGAGCAGATTTTTGAGAAGACAATAGCTGGAATGTATCTTGGCGAAATTGCGCGTAGAGTGCTTTTTGCAATGGCTGAATTCGCCCCTCTTTTTGGCAAATCCATTCCCGAAAAGTTGTCGATGCCATTCATCCTCAGCACACCAGATCTAAGTGCAATGCAACAGGATGCCTCCAATGACCTTCAAGATGTTGGATCAATCTTGTACAAGGTTTTCGGGGTGGAGTTGGATTTAAGTGCACGAAAAATCATCGTGGAGGTGTGCGACACGATAGCAAAGAGAGGCGGGCGATTGGCAGGGGCGGGAATTGTAGGAGTTTTGCAGAAGATTGAAGTTTTAGAAGATCTTAAGCTTGGAAAGAGAAAAGTTGTGGCCATGGATGGAGGATTGTATGAGAGTTATCCACAGTACAGAAGGTACCTTAAAGAAGGAGTAACAGAGCTTTTGGGAACAGATTTGGCTAAGAGTGTGGCCATTGAACATACTAAGGATGGCTCAGGCATTGGAGCTGCTCTTTTGGCTGCTTCAAACTCAATTTATAGAACATGA 1485 46.4 MSIAAAPAAVRSFSPVRSPPSMGLPRSTMAIRSKAVSVSPILTKFQKDCETPLPVLRHVADSMADDMRAGLAVDGGGGGDLEMILSYVDTLPSGDEKGLFYGLDLGGTNFRVLRVQLGGKEDRVIATEFQQLSIPKHLKFATSQELFDFMASGLQKFVEKEGDRFHLSHGRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGMPGNDVVSCLNEAMQRRGLDMHVSALVNDAVGTLAGARYNDKDVVAGVILGTGTNACYIERKDAIPKLQGHSSSSGKTIINTEWGAYKKGLPLTVFDREMDAASINPGEQIFEKTIAGMYLGEIARRVLFAMAEFAPLFGKSIPEKLSMPFILSTPDLSAMQQDASNDLQDVGSILYKVFGVELDLSARKIIVEVCDTIAKRGGRLAGAGIVGVLQKIEVLEDLKLGKRKVVAMDGGLYESYPQYRRYLKEGVTELLGTDLAKSVAIEHTKDGSGIGAALLAASNSIYRT 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20890376 20894243 - Sed0015544.1 Sed13g1574 735084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1574 494 FunFam Phosphotransferase 86 254 - -
Sed13g1574 494 SUPERFAMILY Actin-like ATPase domain 35 245 IPR043129 -
Sed13g1574 494 Gene3D - 86 486 - -
Sed13g1574 494 Pfam Hexokinase 250 487 IPR022673 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0016773(InterPro)
Sed13g1574 494 Pfam Hexokinase 42 243 IPR022672 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0016773(InterPro)
Sed13g1574 494 CDD NBD_sugar-kinase_HSP70_actin 102 264 - -
Sed13g1574 494 PANTHER HEXOKINASE 34 490 IPR001312 GO:0001678(InterPro)|GO:0001678(PANTHER)|GO:0004340(PANTHER)|GO:0004396(InterPro)|GO:0005524(InterPro)|GO:0005536(InterPro)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0005975(InterPro)|GO:0006006(PANTHER)|GO:0006096(PANTHER)|GO:0008865(PANTHER)|GO:0046835(PANTHER)|GO:0051156(PANTHER)
Sed13g1574 494 ProSitePatterns Hexokinase domain signature. 175 200 IPR019807 GO:0005524(InterPro)|GO:0006096(InterPro)
Sed13g1574 494 PRINTS Hexokinase family signature 250 264 - -
Sed13g1574 494 PRINTS Hexokinase family signature 314 336 - -
Sed13g1574 494 PRINTS Hexokinase family signature 396 418 - -
Sed13g1574 494 PRINTS Hexokinase family signature 101 117 - -
Sed13g1574 494 PRINTS Hexokinase family signature 175 200 - -
Sed13g1574 494 PRINTS Hexokinase family signature 472 488 - -
Sed13g1574 494 PRINTS Hexokinase family signature 227 243 - -
Sed13g1574 494 Gene3D - 62 475 - -
Sed13g1574 494 ProSiteProfiles Hexokinase domain profile. 36 487 IPR001312 GO:0001678(InterPro)|GO:0004396(InterPro)|GO:0005524(InterPro)|GO:0005536(InterPro)|GO:0005975(InterPro)
Sed13g1574 494 SUPERFAMILY Actin-like ATPase domain 247 488 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1574 K00844 - - csv:101216058 791.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1573 Sed-Chr13:20885662 Sed13g1574 Sed-Chr13:20890376 9.90E-247 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29