Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1577 ATGGCACTCTTAACATCCTTACCTGATCCTTCTGACCAAAAGAAATCGTTCAACCATAATAAACCTAGAAAAAGGCACCAAAACCCGATGCCGCCGCCGCGACAACCGCCGTCCTCCTCCTCTGCCCAATCTTCATGGGACCAATTCAAGAATCTCATCTCTTGCAAACAGGTTGAGTCGAGGAGAGTTCACGAGCCGACAAAGCGTTCGGCGGCGGCGTATTCGAAGCTGGGTTCATCTTGCAGTTCGATATGTAGTTTCAGAGATGTGGTTCATGGAAACGCCAAAGTCGTACACCGAGCCGACAACTCACCTGAAAGCAGCTCGGTCGGACAGGAAACCCGGTTGCTCACTAGAAAACCGGTTAACGGTTCATCCTCCCGGTCGTTGACGGCGCCGGTCAGAGCCAAAACCGGTGGGTCTGGTTCGTACAGCTCATCGTCCTCTAGAGGAATTCAATTGCGAAAGCTTTCTGGGTGTTATGAATGTCACACCATCGTTGACCCTACCAAATACCCAATTCCGAGGAGTTGTATTTGTCCTTGTCCTCAATGTGGAGAAGTTTTTCCCAAGATTGAAAGCTTGGAACTCCACCAAGCAATTCGCCATGCTGTTTCGGAGTTGGGTCCAGACGATTCGGGTCGAAACATCGTGGAGATAATCTTCAAATCAAGCTGGCTAAAAAAGGACCGTCCAATCTGCAAGATCGAACGGATACTGAAAGTCCACAACACCCAACGCACGATCCAACGGTTCGAGGACTGCCGCGACGCAGTGAAGACACGTGCGCTCGGCAGCACCAGAAAAGACCCGCGCTGCGCCGCCGACGGCAACGAGCTGCTGCGGTTCCACTGCAGCGCGCTGGGGTGCGACCTCGGCTCTCGCGGCTCCACCGGCTTGTGCGGCTCGATCCCCGGCTGCGGTGTCTGCACGCTCATCCGCCACGGCTTCCCCGGTGGGCCCCCCGGCGTGGGGACCACCGCCAGCAGCGGTAGGGCCCACGACTCGTTCCATGGCGGGGACGGGCGGCGGCGGGCCATGCTGGTGTGCCGCGTCATCGCCGGAAGGGTGAAGCGGACGGCGGAGGACGCGGCGGTGGTGGAGGAGGCGGCGGGTTCATACGACGCCGTTTCGAGGAATTCTGGGATTTATTCGAATCTCGAGGAGTTGACTGTTTTCAATCCGAAGGCTATTCTTCCTTGTTTTGTCGTTATCTACGAAGCTCTTCAAACCTGA 1236 56.15 MALLTSLPDPSDQKKSFNHNKPRKRHQNPMPPPRQPPSSSSAQSSWDQFKNLISCKQVESRRVHEPTKRSAAAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKPVNGSSSRSLTAPVRAKTGGSGSYSSSSSRGIQLRKLSGCYECHTIVDPTKYPIPRSCICPCPQCGEVFPKIESLELHQAIRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKDPRCAADGNELLRFHCSALGCDLGSRGSTGLCGSIPGCGVCTLIRHGFPGGPPGVGTTASSGRAHDSFHGGDGRRRAMLVCRVIAGRVKRTAEDAAVVEEAAGSYDAVSRNSGIYSNLEELTVFNPKAILPCFVVIYEALQT 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20939216 20943242 - Sed0014087.1 Sed13g1577 735087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1577 411 SUPERFAMILY ADP-ribosylation 205 407 - -
Sed13g1577 411 ProSitePatterns Zinc finger C2H2 type domain signature. 180 203 IPR013087 -
Sed13g1577 411 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 44 406 - -
Sed13g1577 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 208 IPR013087 -
Sed13g1577 411 MobiDBLite consensus disorder prediction 1 46 - -
Sed13g1577 411 Gene3D - 204 408 - -
Sed13g1577 411 MobiDBLite consensus disorder prediction 101 149 - -
Sed13g1577 411 MobiDBLite consensus disorder prediction 98 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3040 Sed-Chr1:34328683 Sed13g1577 Sed-Chr13:20939216 6.90E-84 dispersed
Sed01g4011 Sed-Chr1:69177439 Sed13g1577 Sed-Chr13:20939216 2.00E-26 dispersed
Sed05g0980 Sed-Chr5:8232734 Sed13g1577 Sed-Chr13:20939216 1.80E-27 dispersed
Sed05g3751 Sed-Chr5:45372689 Sed13g1577 Sed-Chr13:20939216 3.90E-54 dispersed
Sed13g1157 Sed-Chr13:14248788 Sed13g1577 Sed-Chr13:20939216 7.00E-54 dispersed
Sed13g1577 Sed-Chr13:20939216 Sed03g0822 Sed-Chr3:4918291 2.20E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40446 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1577 - - - 0.0