Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1578 ATGGGTTCTGTGGAGGAGAAGATTAAGGTTACAGGGGGTTTGGTTAGTAATGTTTCTCAGACTAATAATCTTCTGGATGAGATGAAGTTGTTGAAGGAAATGCAAGATCAAGCAGGTTCTAGGAAGGCTATTAGCTCTGAGCTTTGGCATGCTTGTGCTGGTCCACTTGTTTGTTTACCTCATGTTGGGAGTCTTGTTTATTACTTTCCTCAAGGGCATAGTGAACAAGTGGCAGTTTCTACCAAGAGAACAGCAACATCCCAGATTCCAAATTATCCCAGTCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCTGATAAAGAATCAGATGAAATCTATGCTCAAATGAGTCTTCAACCAGTGAACTCTGAAAAAGATGTGTTCCTAGTTCCCGACTTCGGATTAAGGCCTAGTAAACACCCGAACGAGTTCTTTTGCAAGACTTTGACTGCCAGTGACACCAGCACACATGGTGGATTCTCAGTCCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCACTGGATTACACAATGCAGCCCCCAACTCAGGAGCTAGTCGTTCGAGACCTACACGACAATTCTTGGACTTTTCGCCACATTTATCGCGGGCAGCCTAAGAGACACCTTCTCACAACGGGGTGGAGTCTATTCGTTGGGGCGAAGAGACTTCGAGCAGGCGATTCGGTCCTGTTTATAAGAGATGAAAAGTCCCAGTTGCTGATCGGAGTGCGACGTGCTAACCGGCAACAAACAACTCTGCCATCATCAGTTCTTTCTGCTGATAGTATGCACATAGGGGTTCTTGCCGCTGCGGCTCATGCTGCTGTGAATCGGAGTCCGTTCACAATCTTCTACAATCCCAGAGCATGTCCTTCAGAGTTTGTTATTCCCTTATCCAAGTATCGCAAATGTGTGTACGGAACTCAACTTTCTGCTGGCATGAGATTTGGGATGATGTTTGAAACAGAAGAGTCCAGTAAACGTCGATATATGGGGACAATTGTTGGACTTAGCGATATTGATCCACTTAGATGGCCAGGTTCCAAATGGCGAAACCTTCAGGTGGAGTGGGATGAGCCAGGGTGCTGTGACAAGCAGAACAGAGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTCTTCATTTTTCCTTCTCTAACTTCTGGTCTTAAACATCCATTACACGGTGGATTCTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCGATGCTTCGTGTTCCCGAAAATGTACGTGGGGATCTTTCATATGCACAGAATTTATGCTCAGAACCACTGATGAAGATGCTATTGAGGCCTCAACTGGTTAACCTTCACGGCGCCAACTTGCAGCAGGATTCAACTAACAATTCAGCTAAGTTACATGACATGAAGAACATACAACCAGTAACCAATCCCAAAATGCAGCTTGTAATGTCAGAAAATGCATCTCCTCAGAATCAAATTCATCATCAACATCATCCATATGATCCCACAAACTCAAATTCATCGCCAAAAGGAAAAGTACATTTACACCCTTCTGCAGTCATTGAAATTGAAGCTCCAAGTGGAGCTGTTGATCTTTCAACCAATCAGTCTAATCCATTGCCCCAAGTAGGAGATTGTGGGGAGGAAAAACTCACTGCTAATGAAGTGAATATGCAAAACCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGTTGCAATCCATATCCTGGCCAATGCAGCCTCAATTGGAATCATTGATCCAACAACACCCACAACTAATTGACATGCCTCAGCCTGAATTTCCCAATTCAAATGGTTTGATTTCATCTCTAGATGGCGATGGATGTATGACGAGGTCGCCTATGAATCTCTCTATGTTGGGTTTGCAAGACTCCTCCATGGTCTTTCCTGAGGCTTTTAATTTTCCCTTACCCTCTACAGGACATGACATGTGGGATCCTCTTAATAATATAAGGTTCTCATCTCAAACGAATCATCAAGTACCGTTCTCGCATCCGGACGCGTCGAACATGAACTGTATGGCTAATGCTAATGTTATGAGAGATGCTTCTGATGAGAGCAACAACCAGAGTGGGATATATAGTTGCTCTAACATTGAAAATGGTGGAAGTACTATGGTTGATCCTGCTGTTTCAAGCACCATTCTTGATGATTATTGCACGTTGAAAGATGCTGATTTCCCACACCCTTCAGATTGCTTGGCCGGTAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATTACTTCTGCTAGTTTGGGAGATTCTCAGCCTTTTTCCAAGCAAGAGTTCCATGATAATTCAGGTGGCTCATCCTCATGTAATGTGGATTTTGATGATGGCAGTCTTTTGCAGAATGGCTCATGGAAGCAAGTGGTACCTCCCACGAGAACTTACACAAAGGTCCAAAAGGCTGGATCTGTTGGGAGATCTATTGATGTCACTAGTTTTAAGAACTATGAAGAACTATGCTCTGCAATTGAATGTATGTTTGGACTTGAAGGTTTACTAAATGATCCAAGAGGATCAGGATGGAAACTGGTTTATGTCGATTACGAGAACGACGTCCTGCTTATCGGCGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGATGTATTAGGATCTTGTCACCCTCAGAAGTTCAGCAAATGAGCGAAGAAGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCTCAATGTCAGAAGGTGGCAGAGCTTAA 2766 43.82 MGSVEEKIKVTGGLVSNVSQTNNLLDEMKLLKEMQDQAGSRKAISSELWHACAGPLVCLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPSLPSQLMCQVQNVTLHADKESDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNSWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAVNRSPFTIFYNPRACPSEFVIPLSKYRKCVYGTQLSAGMRFGMMFETEESSKRRYMGTIVGLSDIDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKHPLHGGFLGETDWGSLVKRPMLRVPENVRGDLSYAQNLCSEPLMKMLLRPQLVNLHGANLQQDSTNNSAKLHDMKNIQPVTNPKMQLVMSENASPQNQIHHQHHPYDPTNSNSSPKGKVHLHPSAVIEIEAPSGAVDLSTNQSNPLPQVGDCGEEKLTANEVNMQNLVNQLSFVNQNQLQSISWPMQPQLESLIQQHPQLIDMPQPEFPNSNGLISSLDGDGCMTRSPMNLSMLGLQDSSMVFPEAFNFPLPSTGHDMWDPLNNIRFSSQTNHQVPFSHPDASNMNCMANANVMRDASDESNNQSGIYSCSNIENGGSTMVDPAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQPFSKQEFHDNSGGSSSCNVDFDDGSLLQNGSWKQVVPPTRTYTKVQKAGSVGRSIDVTSFKNYEELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSMSEGGRA 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20953766 20961433 - Sed0022302.1 Sed13g1578 735088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1578 921 FunFam Auxin response factor 314 386 - -
Sed13g1578 921 SUPERFAMILY DNA-binding pseudobarrel domain 137 279 IPR015300 -
Sed13g1578 921 CDD B3_DNA 149 250 IPR003340 GO:0003677(InterPro)
Sed13g1578 921 Pfam AUX/IAA family 851 895 IPR033389 -
Sed13g1578 921 SUPERFAMILY CAD & PB1 domains 799 886 - -
Sed13g1578 921 MobiDBLite consensus disorder prediction 489 514 - -
Sed13g1578 921 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677(InterPro)
Sed13g1578 921 SMART B3_2 150 252 IPR003340 GO:0003677(InterPro)
Sed13g1578 921 MobiDBLite consensus disorder prediction 755 782 - -
Sed13g1578 921 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677(InterPro)
Sed13g1578 921 Gene3D - 148 251 IPR015300 -
Sed13g1578 921 Gene3D - 804 896 - -
Sed13g1578 921 Gene3D - 314 386 - -
Sed13g1578 921 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 43 899 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed13g1578 921 ProSiteProfiles PB1 domain profile. 807 891 IPR053793 -
Sed13g1578 921 FunFam Auxin response factor 148 252 - -
Sed13g1578 921 Pfam Auxin response factor 276 359 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Sed13g1578 921 FunFam Auxin response factor 803 896 - -
Sed13g1578 921 MobiDBLite consensus disorder prediction 489 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2496 Sed-Chr1:18647969 Sed13g1578 Sed-Chr13:20953766 0.00E+00 dispersed
Sed08g2648 Sed-Chr8:38656979 Sed13g1578 Sed-Chr13:20953766 2.20E-167 dispersed
Sed13g1578 Sed-Chr13:20953766 Sed14g1598 Sed-Chr14:24132416 7.70E-168 dispersed
Sed01g2495 Sed-Chr1:18647969 Sed13g1578 Sed-Chr13:20953766 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40447 PF02309 AUX_IAA 4.30E-10 CL0072 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1578 K14486 - csv:101216825 1618.59