Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1580 ATGTCAACCGGAATCGGAAAATGCAGCAAAATCCGGCACATTGTCAGGCTCCGGCAAATGCTCCGGCGGTGGCGCAACAAGGCCAGAATCTCCGCCAACCGCATCCCCTCCGACGTTCCGGCCGGCCACGTCGCCGTCTGCGTCGGAACCGGTGGCCGGCGCTTCGTCGTCCGGGCCACTTACTTGAACCACCCGGTTTTCAAGAAACTTCTGGTTCAAGCCGAGGAGGAGTACGGGTTCACCAATCAAGGCCCCTTGGCAATCCCTTGCGACGAGTCGGTTTTCGAAGATGTGATCCGGTTCATCTCCAGATCGGAGTCGTCCAACTCGGGGCGGTTTATGAAACTGGACGATTTTCAGAGCTACTGCCACGCTGGCATCAGAACCGGGCTTGATTTATGGCCGGAATCTCGGCCGTTGCTTCATGGGTTGGCCGAGAAATCAATTTGGGAGGATCCCACCGTCGTCGTCCCGAGCCCGAACCCGAGTCGGGGCGAACCGAAACCGAAGAAGGAAGAAGAACAGTTAACAACTACAGCAAGTGTTGCTAATTCGGTTAGAGGAGTACTTTGTGTAAATTAA 582 55.84 MSTGIGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTGGRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEDVIRFISRSESSNSGRFMKLDDFQSYCHAGIRTGLDLWPESRPLLHGLAEKSIWEDPTVVVPSPNPSRGEPKPKKEEEQLTTTASVANSVRGVLCVN 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20993313 20994188 + Sed0001911.1 Sed13g1580 735090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1580 193 Pfam Auxin responsive protein 16 102 IPR003676 GO:0009733(InterPro)
Sed13g1580 193 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 101 IPR003676 GO:0009733(InterPro)
Sed13g1580 193 MobiDBLite consensus disorder prediction 155 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2020 Sed-Chr3:14115317 Sed13g1580 Sed-Chr13:20993313 2.00E-15 dispersed
Sed05g2274 Sed-Chr5:35337147 Sed13g1580 Sed-Chr13:20993313 6.60E-45 dispersed
Sed05g3562 Sed-Chr5:44196717 Sed13g1580 Sed-Chr13:20993313 1.40E-42 dispersed
Sed01g2499 Sed-Chr1:18707600 Sed13g1580 Sed-Chr13:20993313 8.60E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1580 K14488 - csv:101216342 295.049