Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1580 | ATGTCAACCGGAATCGGAAAATGCAGCAAAATCCGGCACATTGTCAGGCTCCGGCAAATGCTCCGGCGGTGGCGCAACAAGGCCAGAATCTCCGCCAACCGCATCCCCTCCGACGTTCCGGCCGGCCACGTCGCCGTCTGCGTCGGAACCGGTGGCCGGCGCTTCGTCGTCCGGGCCACTTACTTGAACCACCCGGTTTTCAAGAAACTTCTGGTTCAAGCCGAGGAGGAGTACGGGTTCACCAATCAAGGCCCCTTGGCAATCCCTTGCGACGAGTCGGTTTTCGAAGATGTGATCCGGTTCATCTCCAGATCGGAGTCGTCCAACTCGGGGCGGTTTATGAAACTGGACGATTTTCAGAGCTACTGCCACGCTGGCATCAGAACCGGGCTTGATTTATGGCCGGAATCTCGGCCGTTGCTTCATGGGTTGGCCGAGAAATCAATTTGGGAGGATCCCACCGTCGTCGTCCCGAGCCCGAACCCGAGTCGGGGCGAACCGAAACCGAAGAAGGAAGAAGAACAGTTAACAACTACAGCAAGTGTTGCTAATTCGGTTAGAGGAGTACTTTGTGTAAATTAA | 582 | 55.84 | MSTGIGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTGGRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEDVIRFISRSESSNSGRFMKLDDFQSYCHAGIRTGLDLWPESRPLLHGLAEKSIWEDPTVVVPSPNPSRGEPKPKKEEEQLTTTASVANSVRGVLCVN | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 20993313 | 20994188 | + | Sed0001911.1 | Sed13g1580 | 735090 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1580 | 193 | Pfam | Auxin responsive protein | 16 | 102 | IPR003676 | GO:0009733(InterPro) | |
Sed13g1580 | 193 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 17 | 101 | IPR003676 | GO:0009733(InterPro) | |
Sed13g1580 | 193 | MobiDBLite | consensus disorder prediction | 155 | 179 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2020 | Sed-Chr3:14115317 | Sed13g1580 | Sed-Chr13:20993313 | 2.00E-15 | dispersed | |
Sed05g2274 | Sed-Chr5:35337147 | Sed13g1580 | Sed-Chr13:20993313 | 6.60E-45 | dispersed | |
Sed05g3562 | Sed-Chr5:44196717 | Sed13g1580 | Sed-Chr13:20993313 | 1.40E-42 | dispersed | |
Sed01g2499 | Sed-Chr1:18707600 | Sed13g1580 | Sed-Chr13:20993313 | 8.60E-84 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1580 | K14488 | - | csv:101216342 | 295.049 |