Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1585 ATGACAATAACAGCACCTTCGTTTTCTCGCCTTCATTCTCCATTTCTGCATTGTCCTCTCAAACCCAATTCATCAGCTTCTTTATCTGTTACAATTTCAAGAAATCAAAGAGCAGCAACATCATATCCAAGCATCAGAGCTCTAGATCTTGACCAAAACACGGTTGTGGCACTTTCAGTTGGGCTAGTGAGTGTTGCAGTTGGAATAGGTGTTCCTGTCTTCTATGAAACCCAAATTGATAATGCTGCGAAGCGTGAAAATACTCAGCCCTGCTTTCCCTGCACTGGTTCGGGAGCACAGAAATGCAGATTTTGCATGGGAACTGGAAATGTGACCGTGGAACTTGGTGGAGATGATAGGGAAGTCTCCAGATGTATCAACTGTGATGGCGCTGGCACATTGACATGCACTACATGTCAGGGCTCTGGAATTCAACCTCGATATCTAGATCGTAGAGAATTTAAAGATGATGATTGA 477 43.61 MTITAPSFSRLHSPFLHCPLKPNSSASLSVTISRNQRAATSYPSIRALDLDQNTVVALSVGLVSVAVGIGVPVFYETQIDNAAKRENTQPCFPCTGSGAQKCRFCMGTGNVTVELGGDDREVSRCINCDGAGTLTCTTCQGSGIQPRYLDRREFKDDD 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21076269 21080002 - Sed0018016.1 Sed13g1585 735095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1585 158 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN 36 144 - GO:0003756(PANTHER)|GO:0009507(PANTHER)|GO:0010206(PANTHER)
Sed13g1585 158 Pfam Family of unknown function (DUF5351) 102 133 IPR035272 -
Sed13g1585 158 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 86 145 IPR036410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1585 K22520 - - csv:101216711 280.026
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1094 . Blo12g00887 Bda01g00488 Bda03g00287 . Bpe04g00244 Bma04g00244 . . . . Cma09g00111 . . . Cpe06g00074 . . . . . . . . . . . . . . . Cone4ag1965 Cone7ag1878 . . Lsi04g01736 Csa03g04271 Chy04g00424 . . . . . . . . . Sed13g1585 . Cmo09g00108 . . . Car09g00101 . . Bhi09g02096 Tan01g5009 Cmetu04g0223 . Hepe01g1622 Mch11g0126 . Cla05g01876 Cam05g2007 Cec05g2019 Cco05g2078 Clacu05g2000 Cmu05g1881 Cre05g2004 . . . Cme04g00476