Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1603 ATGGCTCGAGGGAAGATCCAGATCAAGCGAATCGATAACCCGACGAACCGACAAGTAACGTACTCGAAGCGCCGCAACGGGCTGTTCAAGAAGGCGAACGAGCTCGCCGTTCTTTGCGACGCCAAAGTCTCCATCATCATGTTTTCTAGCACTGGCAAACTTCATGAATTCATCAGCCCTGCTACTGAGACCAAGGAGATGTTCGATCAGTACCAGAAGACTTTAGGCGTTGATCTTTGGATCTCTCACTATGAGAAAATGCAAGAGAATTTGAAGAAGCTGGAAGTTGTGAATCGAAATCTTCGAAGGCAGATTAGGCAGAGGATGGGGGAATATTGTATGAATGATTTGAGCTTTGAGGAACTGCGTTGCCTTGAGGATGATATGGATAATGCTGTCAGGATCATACGCGAACGCAAGTATCGGGTGATATCAAACCAAATTGAAACTCACAAGAAAAAGTTCAAGAGTGTAGGAGAAATACATGAGGGTCTTCTCCGGGAGTTTGATATTGCAACGGAGGAAGACCCACATTATGGTTTGGTAGACAATGGAGGAGATTACAATGATTCAGTTATGGGATTCTCAGGCATTGGCCCTCGAATTTTCGCCCTTCGCCTCCAGCCGAACCACCCGAATAATTCAGATCTTACCACTTATCCACTTCTTTAG 672 45.54 MARGKIQIKRIDNPTNRQVTYSKRRNGLFKKANELAVLCDAKVSIIMFSSTGKLHEFISPATETKEMFDQYQKTLGVDLWISHYEKMQENLKKLEVVNRNLRRQIRQRMGEYCMNDLSFEELRCLEDDMDNAVRIIRERKYRVISNQIETHKKKFKSVGEIHEGLLREFDIATEEDPHYGLVDNGGDYNDSVMGFSGIGPRIFALRLQPNHPNNSDLTTYPLL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21213085 21223956 - Sed0007855.1 Sed13g1603 735113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1603 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1603 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1603 223 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed13g1603 223 Gene3D - 13 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1603 223 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1603 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1603 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1603 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1603 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1603 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 163 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g1603 223 Coils Coil 84 111 - -
Sed13g1603 223 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g1603 223 FunFam MADS-box transcription factor 16 13 97 - -
Sed13g1603 223 Pfam K-box region 82 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g1603 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1603 Sed-Chr13:21213085 Sed09g0101 Sed-Chr9:753468 1.50E-24 dispersed
Sed13g1603 Sed-Chr13:21213085 Sed13g1604 Sed-Chr13:21213085 2.00E-114 tandem
Sed01g2519 Sed-Chr1:18838408 Sed13g1603 Sed-Chr13:21213085 4.70E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40448 PF01486 K-box 1.10E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1603 K09264 - csv:101218008 377.096