Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1604 ATGGCTCGAGGGAAGATCCAGATCAAGCGAATCGATAACCCGACGAACCGACAAGTAACGTACTCGAAGCGCCGCAACGGGCTGTTCAAGAAGGCGAACGAGCTCGCCGTTCTTTGCGACGCCAAAGTCTCCATCATCATGTTTTCTAGCACTGGCAAACTTCATGAATTCATCAGCCCTGCTACTGAGACCAAGGAGATGTTCGATCAGTACCAGAAGACTTTAGGCGTTGATCTTTGGATCTCTCACTATGAGAAAATGCAAGAGAATTTGAAGAAGCTGGAAGTTGTGAATCGAAATCTTCGAAGGCAGATTAGGCAGAGGATGGGGGAATATTGTATGAATGATTTGAGCTTTGAGGAACTGCGTTGCCTTGAGGATGATATGGATAATGCTGTCAGGATCATACGCGAACGCAAGTATCGGGTGATATCAAACCAAATTGAAACTCACAAGAAAAAGGATATTGCAACGGAGGAAGACCCACATTATGGTTTGGTAGACAATGGAGGAGATTACAATGATTCAGTTATGGGATTCTCAGGCATTGGCCCTCGAATTTTCGCCCTTCGCCTCCAGCCGAACCACCCGAATAATTCAGATCTTACCACTTATCCACTTCTTTAG 627 45.61 MARGKIQIKRIDNPTNRQVTYSKRRNGLFKKANELAVLCDAKVSIIMFSSTGKLHEFISPATETKEMFDQYQKTLGVDLWISHYEKMQENLKKLEVVNRNLRRQIRQRMGEYCMNDLSFEELRCLEDDMDNAVRIIRERKYRVISNQIETHKKKDIATEEDPHYGLVDNGGDYNDSVMGFSGIGPRIFALRLQPNHPNNSDLTTYPLL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21213085 21223956 - Sed0007855.2 Sed13g1604 735114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1604 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 160 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g1604 208 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed13g1604 208 Pfam K-box region 82 161 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g1604 208 ProSiteProfiles K-box domain profile. 84 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed13g1604 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 Coils Coil 84 111 - -
Sed13g1604 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed13g1604 208 FunFam MADS-box transcription factor 16 13 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2519 Sed-Chr1:18838408 Sed13g1604 Sed-Chr13:21213085 5.80E-96 dispersed
Sed05g2399 Sed-Chr5:36388085 Sed13g1604 Sed-Chr13:21213085 2.00E-31 dispersed
Sed13g1604 Sed-Chr13:21213085 Sed09g0101 Sed-Chr9:753468 1.20E-23 dispersed
Sed13g1603 Sed-Chr13:21213085 Sed13g1604 Sed-Chr13:21213085 2.00E-114 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40449 PF01486 K-box 2.50E-18 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1604 K09264 - csv:101218008 345.125