Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1605 ATGGCTGATGGAATTAGCTCATCCATGAGCAGGTCATCAAGAATGTGGTGTTCAATCCCTGAAAGGCTTCAACTTCATGGAGCCATGTTGGCCTTGCAATTTGGCTATGCTGGTTTCCATGTTGTGTCTAGGGCTGCCCTTAATATGGGCATTAGCAAACTTGTGTTCCTTGTTTATAGGAACATCATTGCCTTTTTCCTTCTATTGCCCTTTGCTTATTTCCTTGAAAAGAAGGAAAGGCCTGCTATTTCTCTCAATTTTCTGCTTCAATTCTTCCTTCTTGCACTTGTTGGAATCACAGCAAATCAAGGGTTTTACTTGCTCGGATTAGAGAACACATCGCCGACGTTCGCATCGGCGATACAAAACTCGGTCCCGGCGATAACCTTCCTCATGGCTGCATTACTCCGAATAGAACAAGTGAGACTAAACAGAAAAGATGGAATAGCAAAAGTGATGGGAACATTATGCTGCGTGGCTGGGGCCACAGTGATCACTCTCTACAAAGGTCCAACCATATACAGCCCAGGCTCGGGTTCTCCGTCCGGGCTACACGCGGTCGAGATGGCTGCGCCAATTTTCGGTTCGCTTGGGGACGCAAGGCCGAAGAGCTGGACCCTGGGCTGTGTGTTTCTGATCGGCCATTGCTTGTCCTGGTCCGGTTGGCTCGTTTTGCAAGCACCGGTTTTGAAAAACTACCCGGCTCGGCTTTCTGTCACTTCTTATACTTGTTTCTTTGGGATTATTCAATTCATTATCATTGCTGCCATTGCTGAGAGAGATGTTCAGGCTTGGATCTTTCACTCCAGTGGCGAAATCTTTAGCGTCTTGTATGCGGGAGTGGTAGCTTCAGGGATAGCATTTGCAGTGCAAATATGGTGCATCCAAAAAGGAGGGCCTGTTTTCGTGGCTGTTTATCAACCTGTTCAGACTCTTGTTGTCGCCATCATGGCTTCTTTTGCATTGGGCGAAGAGTTTTACTTGGGAGGGATTATTGGGGCAGTGCTTATAATCACTGGCTTATACTTGGTGTTATGGGGCAAAAATGAAGAGAGAAAATTTGCACTCGAAAAGGCTGCAATCCTCTCCGCTCCGGACCACAGTAACAGCCGTGCGCCCGCTCACATCAAGCCCTCCATTACTCAGCCGCTTCTCATCCACTCATCCAACGACAATGTTTGA 1182 47.55 MADGISSSMSRSSRMWCSIPERLQLHGAMLALQFGYAGFHVVSRAALNMGISKLVFLVYRNIIAFFLLLPFAYFLEKKERPAISLNFLLQFFLLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTLCCVAGATVITLYKGPTIYSPGSGSPSGLHAVEMAAPIFGSLGDARPKSWTLGCVFLIGHCLSWSGWLVLQAPVLKNYPARLSVTSYTCFFGIIQFIIIAAIAERDVQAWIFHSSGEIFSVLYAGVVASGIAFAVQIWCIQKGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAVLIITGLYLVLWGKNEERKFALEKAAILSAPDHSNSRAPAHIKPSITQPLLIHSSNDNV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21247976 21252295 + Sed0011621.1 Sed13g1605 735115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1605 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 59 169 - -
Sed13g1605 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 264 350 - -
Sed13g1605 393 PANTHER WAT1-RELATED PROTEIN 28 359 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed13g1605 393 Pfam EamA-like transporter family 207 345 IPR000620 GO:0016020(InterPro)
Sed13g1605 393 Pfam EamA-like transporter family 30 166 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1605 Sed-Chr13:21247976 Sed14g0046 Sed-Chr14:593769 1.40E-57 dispersed
Sed11g1065 Sed-Chr11:26042393 Sed13g1605 Sed-Chr13:21247976 6.20E-159 wgd
Sed13g1605 Sed-Chr13:21247976 Sed03g1722 Sed-Chr3:11247621 1.10E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1605 - - - 0.0