Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1633 ATGTGTGGAACTGATATTCCAACATTTGAGAAATTGAATGATATCCGCTCAGCAAATATTGAGAGTGAAGTGGCAAATAAGCCAGAACTTCCAGTTTCTGGTGATGGTGATTGTAAACAGACTTCTAGATCAACTACTCCTACCAATTGTCAAAAAAGAACTGGCTGGTTTAGATCAGGTTCAGCTGATAAATTATTCAATGGATATGAGGTTGATCAACGGGTTCAGAATCCTGAAACTCCACCAAAATTTAATTTTCTGCCTAAATTTGCTACAAGTGATGGATTTTCAGGGAGTGGTTTAAATTCTGAAACATTTGAACGGTCAAAGGATTCTTATGACGTTTCTTCACCACCATATTTTGGGGAGGAGGTTAAGGTGGATCCAGTTGCTGCTGCCTCGGTTGCGGCTTTGAGAAAAGCAATTGATGCGGCTCAGGAAAGGATAACAATTGCTAAGGAGTCGATGGAAAGAAAGAAAGCTGCTGGACACAAAAAGCATAAGAAAATAAGGTCTTCTAGGAGCCTAAATCCTGAAGAGAGACGAGAGCTGAGAACTTCGAACAGTTCAAGCACATGCCAAAAGGGGATGGCTGGGGAAACTTGTGAAAAAGTTGGCACTTCAGAGGAAGCAATTGCTGAAAGCAGGGAGGGGAATTTATCTACAGAATATCCTATCATTCAGAGAGCGGTGAGGGAAAATCTAAATGCCACAGAAACAAATTCTGTGGAATTTAAGTCAACAAAAGTTGATTACAGGGAGGAAGAAGCAAAAGAACTAGATGCAACAGAACAATTTTATGAACCTAGTAGGTCTTTTGGTGAAGATGAGGCAAAAGAACTGGAACCTTTGGAGGAAGACAATGCCGATGAACATGGATGCCAAGGAAGCCATGGATTACAGGAAACATTTGAGAATCCTGTAGAGTGTGGTGATAGCTTGGTAATGGTTGAAAAGGTCAAGGAACCTGAGGAAAGTGGCATAAACTTAAGTGTAGTCAAAGGCATTCTTATGAGCAAATTAAAATCAGTTCTAGGTGTCGTTGATCAAGAAGAAGATAAAATAACACGAGGCCAAAATCAGCTAGAAACTGAAAGGAAAGTTGAGGCATCCATGGGATATGAAAAATGTGTGGAATTGCTGGAAGAATTTCAAGTAACAAAAGATCGAGAGGAGTTCGCAATCAGGGAGATGGGGGAAAACAGCGACATGGACAAGAAAGTTGAGGCTTATCAATGTGTGGTGGAGGAAGTAAAACATATTTTTCATCAAGAAGAAAAAGAGAGGGAAAGAACTGCTGTCCAAATCGAAAATGACGTTGAAAAAACACTCGACAAACCTAGCGAAGAGGAAATAAATATTAATTGCATTAATGACTTCCATGATGGCGAAGAAGCTCAAGACATGCAAGAAGATGTCAAATCAAAAGGAAATGAGGAGCTTGAAGAAAACAAACAGGTTGATGAGATGATTGAAAGACTTTCTTTTCATTTGTACAATAATGAGTTTGGGCATCATGTTCTCAGACAAATAGACACTGGTGAATGTGCAGTACACAAGAACATTGTAACATCAACGACAGACAATCTGAATACTGAGAATCAAATTGAACCAGAAGATGGTTTATGTAAGCAGGATGAATGTGATAACCTCTCAGAAGATCAAGATGCTGATAATTTTATAGAAAGTATGGAAGGAGTGAAAGCGATTACTGACCAACCTGAATATCGAGAGACTCATAATTCAACAGAAATAACTAATATTTCCTTGGAAGTCCTAAATAATGAATCTGAGGAAATAACAGAGGACGGTAACATGGATGAAAGATTGCCTTTTAAATTGTTTTCAATGGCCGAGGAAGCACTTAATCGTAGAGAATTAAGAGTCAAAATGGAAGATTCAGATGCAAGCCTCATTTCAATCCATAATGGGTTAGATTTAGGTGTAATCAATATAAAATTAGAGCAAATGCAACATGATGCATCTGTGGACTGGTCCTCAATCTTTTGCAGTTTGGGAAATGCCGAAGGTATGGCTCCTGAACTTAGAGAAATTGAGAGAAGTATAGATAAAATTGAAGTTTCAATGAATGAAGAAAATGATGATTCAAATGAAGAAGAGGTACTCAGTAATGTAAATGATACTGAAGCAGGTAACCAACCTGGTATAACTGAAGACGACTACAAAATTAGTGAAGTAGTGGAGGAAACTGTCATAATTACTGAAGCAACTGAGAACCATCAAGCGACCATCAAAGTAGAAGAAAGCGAAACTGATTACGTTTTGAAAAATGAAATGCAGTTGGAATTTGATGAGATCAATATTAGAGATGGTAGCCAATCTGGGATGATTGAAATGGACTCAGAAATAATTCATGAGATCAAAACAAATCTAAGTCCAGGAGAAAGTGAGAAGAGTTATTGTGAAATTATGACTGAGGACGATGTGGAAGCTACAGACTCCTCCGACAAAGAGGTGGAATACGCAGTTCGCTCTCAAAGTCTAGGAGAAAGTGAGAAGAGTTATTGTGAAATTATGACCGAGGACGAAGTTGAAGCTACTGATTCTTCTGACAAAGAGGTGGAATATACAGTTCACTTTGAAAATTTGGAAGAAGCTGATTTGCCTGGAAGTTCAGGAAGACAAGAGGATTTAGAAAATATAGAACAAGAGATTAGTACTAGCCAAATGGGATCAGAAAACGATTGTCATCCAGCAACCCCATCTTTGGATGAAATAGAAATTAAAGCTGACATGCAGAACGAAGCAGGGATTGGATCCAAATTCACCAACGAGATAGAAGCTCGTGGTTTGCCTCAAGCTATAGATGGAATGGAGGAGTTGGTTGAGAACTCAACAAATCAAAGTATCTTAGAAAAGGGAGTGAATCATCAAGCGACCCGGTTAATGCAGGATGAGAAGGCATCCCATGAGAAATTTGAGAAAGAACCTGAAGTGATAAAGGAGCAGCAGAAAAAAATTGATGAACCAAAGGAAAAGGAAAGAGACAGGGAGAGATTAGCTGTAGAAAGAGCAATACGTGAGGCTCGTGAAAGGGCATTTGCAGAAGCCCGAGACAGGGCTGCTGCTGAGAGAGCTTCTGCTGGCACTCGTCGAAGAGTAATGGCTGAGCCACGTGAACGCTCAGGGAAGACTTCCATAGAGGCGAATTCCAAGCCTTCTGCCGAGAAGGTTTCGAAGGAAGCCAAATTAAAAGCGCAACGTGCTGCCGTTGAAATGGCTACGGCTGAGGCAAGAGAGCGCGCTCTAGATAAAGCTATGTCCGAAAAGGCTATTTCTGAGGCAAGAAATCTGGCTGACAAGATTGTTGCCGAAAAATTAAGTGGTGCTGCTGGAGTTAGTAAAGTAAAGAAGAGCTTTTCATTTAGTGACTCTCAGCCAAAATCTCAAAGTTCTTCCAGCAATTTCAGGCATGCGAATTCATTTAACGTTGGAGAGAAAGAGGTGGAATCTGCTGGGGAATCGTCTCAGAGAAGTAAAGCCAGGTTGGAGAGGCATCAACGAACGGTTGAGCGTGTGGCACAAGCTATTGCGGAGAAGAATATTCGTGACATTCTCGTACAGAAAGAACAAGAAGAAAGAAATAAACTAGCAGAAGGTCTAGATGGTGAAGTTAAACGGTGGTCAAGTGGGAAAGAGGGAAATTTGCGTGCATTGCTATCAACTCTACAATATATCCTGGGGCCCGACAGTGGGTGGCAGCCAGTCCCATTAACAGATATCATCACGGCTGCTGCTGTCAAGAAAGCTTACCGTAAAGCCACTCTTTCCGTTCATCCTGACAAATTACAACAGCGTGGTGCAAGCATCCAACAAAAATACATATGCGAGAAGGTTTTTGATCTTTTGAAGGCTGCGTGGAGCAGGTTCAACGTGGAGGAACGATTATAG 3912 40.54 MCGTDIPTFEKLNDIRSANIESEVANKPELPVSGDGDCKQTSRSTTPTNCQKRTGWFRSGSADKLFNGYEVDQRVQNPETPPKFNFLPKFATSDGFSGSGLNSETFERSKDSYDVSSPPYFGEEVKVDPVAAASVAALRKAIDAAQERITIAKESMERKKAAGHKKHKKIRSSRSLNPEERRELRTSNSSSTCQKGMAGETCEKVGTSEEAIAESREGNLSTEYPIIQRAVRENLNATETNSVEFKSTKVDYREEEAKELDATEQFYEPSRSFGEDEAKELEPLEEDNADEHGCQGSHGLQETFENPVECGDSLVMVEKVKEPEESGINLSVVKGILMSKLKSVLGVVDQEEDKITRGQNQLETERKVEASMGYEKCVELLEEFQVTKDREEFAIREMGENSDMDKKVEAYQCVVEEVKHIFHQEEKERERTAVQIENDVEKTLDKPSEEEININCINDFHDGEEAQDMQEDVKSKGNEELEENKQVDEMIERLSFHLYNNEFGHHVLRQIDTGECAVHKNIVTSTTDNLNTENQIEPEDGLCKQDECDNLSEDQDADNFIESMEGVKAITDQPEYRETHNSTEITNISLEVLNNESEEITEDGNMDERLPFKLFSMAEEALNRRELRVKMEDSDASLISIHNGLDLGVINIKLEQMQHDASVDWSSIFCSLGNAEGMAPELREIERSIDKIEVSMNEENDDSNEEEVLSNVNDTEAGNQPGITEDDYKISEVVEETVIITEATENHQATIKVEESETDYVLKNEMQLEFDEINIRDGSQSGMIEMDSEIIHEIKTNLSPGESEKSYCEIMTEDDVEATDSSDKEVEYAVRSQSLGESEKSYCEIMTEDEVEATDSSDKEVEYTVHFENLEEADLPGSSGRQEDLENIEQEISTSQMGSENDCHPATPSLDEIEIKADMQNEAGIGSKFTNEIEARGLPQAIDGMEELVENSTNQSILEKGVNHQATRLMQDEKASHEKFEKEPEVIKEQQKKIDEPKEKERDRERLAVERAIREARERAFAEARDRAAAERASAGTRRRVMAEPRERSGKTSIEANSKPSAEKVSKEAKLKAQRAAVEMATAEARERALDKAMSEKAISEARNLADKIVAEKLSGAAGVSKVKKSFSFSDSQPKSQSSSSNFRHANSFNVGEKEVESAGESSQRSKARLERHQRTVERVAQAIAEKNIRDILVQKEQEERNKLAEGLDGEVKRWSSGKEGNLRALLSTLQYILGPDSGWQPVPLTDIITAAAVKKAYRKATLSVHPDKLQQRGASIQQKYICEKVFDLLKAAWSRFNVEERL 1303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21437015 21445764 - Sed0018731.8 Sed13g1633 735143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1633 1303 MobiDBLite consensus disorder prediction 1026 1053 - -
Sed13g1633 1303 MobiDBLite consensus disorder prediction 20 54 - -
Sed13g1633 1303 Coils Coil 682 702 - -
Sed13g1633 1303 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 676 1302 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Sed13g1633 1303 MobiDBLite consensus disorder prediction 1158 1173 - -
Sed13g1633 1303 CDD DnaJ 1250 1295 IPR001623 -
Sed13g1633 1303 MobiDBLite consensus disorder prediction 1117 1173 - -
Sed13g1633 1303 MobiDBLite consensus disorder prediction 972 1005 - -
Sed13g1633 1303 Coils Coil 1170 1190 - -
Sed13g1633 1303 MobiDBLite consensus disorder prediction 696 724 - -
Sed13g1633 1303 Gene3D DnaJ domain 1170 1302 IPR036869 -
Sed13g1633 1303 SUPERFAMILY Chaperone J-domain 1127 1298 IPR036869 -
Sed13g1633 1303 MobiDBLite consensus disorder prediction 154 217 - -
Sed13g1633 1303 Coils Coil 1066 1086 - -
Sed13g1633 1303 MobiDBLite consensus disorder prediction 1125 1148 - -
Sed13g1633 1303 MobiDBLite consensus disorder prediction 1026 1072 - -
Sed13g1633 1303 Coils Coil 135 162 - -
Sed13g1633 1303 MobiDBLite consensus disorder prediction 37 54 - -
Sed13g1633 1303 FunFam Auxilin-related protein 1 1173 1302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1633 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1630 Sed-Chr13:21437015 Sed13g1633 Sed-Chr13:21437015 0.00E+00 dispersed
Sed13g1631 Sed-Chr13:21437015 Sed13g1633 Sed-Chr13:21437015 0.00E+00 dispersed
Sed13g1633 Sed-Chr13:21437015 Sed14g1132 Sed-Chr14:20767193 3.60E-62 dispersed
Sed13g1632 Sed-Chr13:21437015 Sed13g1633 Sed-Chr13:21437015 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g927 Blo01g01557 . . . Bpe02g00398 . . Bma01g02313 . . Cma01g01899 . Car01g01482 . . . . . . . . . . . . . . . . . . . Cone7ag1817 . . . Csa03g04197 Chy04g00522 . . . . . . . . . Sed13g1633 Cmo01g01963 . . . . . . Cpe02g00135 Bhi09g02158 Tan01g4952 Cmetu04g2517 . Hepe01g1669 Mch11g0172 . Cla05g01952 Cam05g2098 Cec05g2107 Cco05g2163 Clacu05g2090 Cmu05g1966 Cre05g2084 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35