Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1637 ATGCCTTTAAGAGGCTTAATTCGTGAGAAGAGTGAAATACGAGAAGGAAGTGAGAATTCATCGAGAAAAGTTAGGGATGGAGTTCAAATGCGGCATCTCGGAAAGTCGCATATTGTACCTGAGCAGCCTTCTTCTTCTTCCTCAGCGTTTCCGGCTCCGATCGAGCAAAGCCGTTGGGCGAATTTGCCTCCAGAACTTCTCTTAGACCTAATTCAACGAGTGGAGGCGAGTGAAACCTCTTGGCCTTCTCGCCGGGATGTTGTGGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGGTTACGAAGGAAGTTGTGAGAACTCCTGAACAGTGTGGCTGGATTACGTTCCCAATTTCTTTGAAGCAGCCGGGACCTAGAGACACTTCAATTCAATGCTTCATTAAAAGAGAAAGAGCAACTTCAACGTTTCGGCTCTACCTCGGGCTAAGCCCTGCCCTATCTGGTAATCTAAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACCGATTTCATTGTATCATTAGTTCCCGACGACTTCTCTAGAACAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTATGGGAACAAAGTTTTCCATTTATGACAGTCAGCCTCCACTTGACCCAAATTTGCGAACCAGTAGATCAAAACGAAGGATCCATTTGAAACAAGTTTCTCCTAGTAAAACACCAACCAACTATAAGGTAGCCGCGGTAGCTTACGAGCTAAACGTGCTCCGCACGAGAGGGCCAAGAAGAATGAGGTGCACCATGCATTCGATACCCATTGCAGCCGTAGAAGAGGGTGGCACTGCCCCAACTCCCACAGAGTTTAAAGACTGCATCAATGAACATCATCCATCCACATCAACTTGCCAAGGAAAGAAGGCGATAACCGAGTCCCCCGAGCCTCAGGAATCGCTAGCTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAGCAGCTGCAATGTTGGTGCCTGAACTTCAAAGGGCGTGTTACGGTCGCCTCGGTGAAGAACTTCCAACTCGTTGCTGCAGCGGAAACGAGCCAAAACGTGTCTGCCGCCGAACAAGAGAGAGTGATTCTGCAATTTGGTAAGATTGGGAAAGACATTTTCACAATGGATTATCGCTATCCTCTCTCAGCTTTCCAAGCATTTGCAATTTGCCTTAGTAGCTTTGATACAAAGCCAGCCTGTGAATGA 1230 46.83 MPLRGLIREKSEIREGSENSSRKVRDGVQMRHLGKSHIVPEQPSSSSSAFPAPIEQSRWANLPPELLLDLIQRVEASETSWPSRRDVVACASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTSIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRTSNNYIGKLRSNFMGTKFSIYDSQPPLDPNLRTSRSKRRIHLKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIAAVEEGGTAPTPTEFKDCINEHHPSTSTCQGKKAITESPEPQESLAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21475692 21479317 + Sed0018396.1 Sed13g1637 735147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1637 409 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Sed13g1637 409 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Sed13g1637 409 PRINTS Tubby superfamily signature 175 191 IPR000007 -
Sed13g1637 409 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Sed13g1637 409 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Sed13g1637 409 PRINTS Tubby superfamily signature 191 215 IPR000007 -
Sed13g1637 409 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Sed13g1637 409 PANTHER TUBBY-RELATED 26 408 - -
Sed13g1637 409 CDD F-box_AtTLP-like 59 103 - -
Sed13g1637 409 ProSitePatterns Tub family signature 1. 337 350 IPR018066 -
Sed13g1637 409 Gene3D - 54 107 - -
Sed13g1637 409 SUPERFAMILY F-box domain 54 128 IPR036047 GO:0005515(InterPro)
Sed13g1637 409 Pfam F-box-like 59 101 IPR001810 GO:0005515(InterPro)
Sed13g1637 409 Gene3D Tubby Protein; Chain A 117 409 IPR025659 -
Sed13g1637 409 SUPERFAMILY Tubby C-terminal domain-like 108 409 IPR025659 -
Sed13g1637 409 MobiDBLite consensus disorder prediction 12 31 - -
Sed13g1637 409 Pfam Tub family 120 404 IPR000007 -
Sed13g1637 409 ProSitePatterns Tub family signature 2. 394 409 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0889 Sed-Chr13:6591280 Sed13g1637 Sed-Chr13:21475692 5.40E-145 dispersed
Sed01g2541 Sed-Chr1:19082732 Sed13g1637 Sed-Chr13:21475692 1.10E-195 wgd
Sed13g1637 Sed-Chr13:21475692 Sed14g1125 Sed-Chr14:20719802 7.50E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40451 PF01167 Tub 9.80E-105 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1637 K19600 - csv:101222500 746.117