Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1670 ATGGTTGATTTGGAAATTTCGTCGCTGATTTCGGTCTCTGGAGATGCCGGATTATCTTCTTTAGGTTATATTGAGCCAGAGACGGCGGTGGCTCCGCCGAAGAAGAAGAAACGGAATCTTCCTGGAATGCCTGATCCAGCGGCGGAGGTGATTGCTTTGTCGCCTGTGAGTTTACTGGCGACGAACCGGTTCGTGTGCGAAATCTGCAACAAAGGTTTCCAGCGGGATCAGAATCTGCAACTTCACCGTCGAGGCCATAACCTCCCGTGGAAGCTCCGGCAACGGACCAGCAACGAGGTGCGTAAACGCGTCTATGTTTGCCCGGAGCCGACCTGCGTCCACCACAATCCGGCGAGAGCGCTCGGCGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACACGGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTACAATCCGATTGGAAAGCGCACATGAAAACTTGCGGGACTCGAGAGTACAAATGCGATTGCGGCACTTTATTTTCAAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTACTGGCGGAGGAAAGTGCTCGTTCTCAAACCCTAAAGGAATCGGCTACTTCGAAAGCCGCCGTGGCTTCGCCTCCCCTGCCGCCGCTTACGCCGTCAACCACGGTGGTTTCTCCGGCCTTGTCAATTCACAGCTCAGAATTAGCTGAAAATCCGACAAGACTTCCATCGGTGTCAACGCCTGCAGCCACAACATGCTTGACCACCGCAGCTATCAACAGTACCACAAATGCAAGCGCCAATGGCAGTAGCTCAAACGACCTGCCTGGAAATAGTACTGTTTTTGCCCCAATTTCAGCGACGACGACCCAAATAGTACCCTACAATTGCCCTTCTGTTAATCCCACATCGCTTTCTCTCTTCCTTTCCCCTAAAGGACCCTCCCTCTTTGCCCCACCTGACCAAGACCGGCTTCACTACACGTGGTCAACTCCACCGGCCGCGATGTCCGCCACCGCCTTGCTTCAGAAGGCGGCGGAAATGGGAGCCACCGCGTCGAACCCCTCTCTGTTCCGTGGCTTTGGAATGGCTACTTCTTCCAGTCAAGACAGTTCTGCCCCTGCTCATTGGAGTAGGAATGTGAACCGAGAGAACCGAAATGGTTCTGAATTTCCCTCCGGTTCGGGTATGGTTATGGCGAGTGATCCGTTTTGCTCGTATGGAACTCAGCCCATGACTAGGGATCTTCTTGGCCTTGGCTTAGATTGTGGTGAGGCCTCTGGGAGTAGATTTTCGGCTTTGATCGCCTCCATGGGTGGTGGCGGGTCTGGTTACGATGTTGCCGGCTCGGTCGGCTGCGGCGGAAGTGGCAATGGGAGCTCGTCGGGCGACGCTTGGGATCAAGATGAAGAAAATGAAGAACATTGA 1434 53.63 MVDLEISSLISVSGDAGLSSLGYIEPETAVAPPKKKKRNLPGMPDPAAEVIALSPVSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPTCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARSQTLKESATSKAAVASPPLPPLTPSTTVVSPALSIHSSELAENPTRLPSVSTPAATTCLTTAAINSTTNASANGSSSNDLPGNSTVFAPISATTTQIVPYNCPSVNPTSLSLFLSPKGPSLFAPPDQDRLHYTWSTPPAAMSATALLQKAAEMGATASNPSLFRGFGMATSSSQDSSAPAHWSRNVNRENRNGSEFPSGSGMVMASDPFCSYGTQPMTRDLLGLGLDCGEASGSRFSALIASMGGGGSGYDVAGSVGCGGSGNGSSSGDAWDQDEENEEH 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21730189 21733818 - Sed0016116.1 Sed13g1670 735180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1670 477 Gene3D Classic Zinc Finger 119 199 - -
Sed13g1670 477 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Sed13g1670 477 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 203 - -
Sed13g1670 477 Pfam Zinc-finger of C2H2 type 64 86 IPR013087 -
Sed13g1670 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 423 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed13g1670 477 MobiDBLite consensus disorder prediction 366 396 - -
Sed13g1670 477 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Sed13g1670 477 MobiDBLite consensus disorder prediction 202 224 - -
Sed13g1670 477 Gene3D Classic Zinc Finger 64 106 - -
Sed13g1670 477 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
Sed13g1670 477 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Sed13g1670 477 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Sed13g1670 477 FunFam protein indeterminate-domain 12-like 43 111 - -
Sed13g1670 477 MobiDBLite consensus disorder prediction 452 477 - -
Sed13g1670 477 SMART c2h2final6 64 86 IPR013087 -
Sed13g1670 477 SMART c2h2final6 105 135 IPR013087 -
Sed13g1670 477 SMART c2h2final6 140 160 IPR013087 -
Sed13g1670 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Sed13g1670 477 MobiDBLite consensus disorder prediction 366 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1670 Sed-Chr13:21730189 Sed13g1864 Sed-Chr13:23640561 1.20E-82 dispersed
Sed10g1335 Sed-Chr10:28982201 Sed13g1670 Sed-Chr13:21730189 6.90E-102 wgd
Sed13g1670 Sed-Chr13:21730189 Sed14g1101 Sed-Chr14:20503976 6.30E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40452 PF12874 zf-met 0.0034 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1670 K25869 - mdm:114826446 486.878