Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1694 | ATGGATTCTTCCCAATTCTTCTCATCTTCCACGGTTGCCATTGTCGGAATCTTTTCTCTTCTCATCTTTCTTTATACCCTCTTCAACATATCTACAAAACTCAAATCTAATCCAAAGAAACTCCAACCCGAACCTGCCGGTGCCTGGCCGATAATTGGCCACCTCCATCTACTAACCGCAGCCGAACCAGCTCACATAACCTTCTCAAAGCTAGCCGATACCTATGGACCAATCTTCACATTAAGGTTAGGCATGCACAAAGCCTTGATTGTAAGCAATTGGGAAATAGCAAGAGAGTGCTTTACAACAAACGACAAAATCTTCGCCTCTCGGCCAAAGCTCGTAGCCTCGAAGCTACTCAGTTATGACTCCACCATGATAGGGTTGACCCCCTACGGCGCCCACTGGCGCCGTGTTCGCAAAATAGCAACACTCGAGCTTCTAACAAATCACCGTCTCCAACAACTGCAACACGTTCGAGTATTCGAGGTCGGAAACTCGATGAAGAAGTTGTATGAGCAATGTACCACCGACAAACATAAGTCGGTGGATATGAAGAAGTGGTTTGGAGATATAACCCTAAACATTATCTGTAGGGTTGTGGTGGGAAAGCGATTTTCGACCGCGGTCGAGGGTGGTGGTGGTGGTGGTGGTGACGAGTATAAGAAGGCGTTGCGGGATTTCTTTGAATGGTTCGGAGTGTTTGTTCCCTCGGATTCGTTTCCGTTTTTGAAGTGGTTTGATTTTGGAGGATATGAGAAGGCCATGAAGAAGACAGCCAAAGTGTTGGATTTGATGTTTGATAAATTGCTTGAAGAGCATAGGCAAAAGAGAGATTGTAGTGAAGTGATGATGGAGGAGAATGATTTCATGGATGTTATGCTTTCTTCTGTTAGAGATGATGATGGACTTTCTAGCTATGATGCTCATATTGTCACCAAGTCTACATGTTTGGCTCTCATATTAGCGGGATCGGACACAACAACTATAACAATGATATGGGCACTTTCTTTACTTCTCAACAACGAAGAATCACTAAAGAAAGCTCAACTCGAATTAGACGAACAAATTGGAAGACAAAGACAAGTAAAAGAGTCGGACATACAAAATCTTCCCTATCTTCAAGCAATCGTAAAGGAAACATTGCGTTTGTATCCCGCAGGACCACTTGCAATTCCACACGAATCTACTGAAGATTGCACAATTGCTGGCTACTACATTCCTGCACGAACACGGCTGATGGTCAATATTCAGAAGCTTCAAAGAGACCCACAAATATGGGAGAATCCTTGTGAATTTCGACCCGAAAGATTTCTAACCAGTCGAAATGATTTCGATGTTAGAGGACAAAGCCCCGAGTTGATACCGTTTGGAAGTGGGCGAAGGATGTGTCCTGGAATCTCATTTGCCCTTCAAATTTTGCATCTGACACTTGCAAATTTGGTTCATGGATTTGAAATTTATAGACCATGTGACAAGTTGCTCAATATGGAGGAAAGTGCTGGTATGACTAGTATTAGAAAGGACCCACTTGAGGTTTTTTTGAGTCCACGGCTACAAGCTCAAGTTTATGATTGA | 1578 | 43.35 | MDSSQFFSSSTVAIVGIFSLLIFLYTLFNISTKLKSNPKKLQPEPAGAWPIIGHLHLLTAAEPAHITFSKLADTYGPIFTLRLGMHKALIVSNWEIARECFTTNDKIFASRPKLVASKLLSYDSTMIGLTPYGAHWRRVRKIATLELLTNHRLQQLQHVRVFEVGNSMKKLYEQCTTDKHKSVDMKKWFGDITLNIICRVVVGKRFSTAVEGGGGGGGDEYKKALRDFFEWFGVFVPSDSFPFLKWFDFGGYEKAMKKTAKVLDLMFDKLLEEHRQKRDCSEVMMEENDFMDVMLSSVRDDDGLSSYDAHIVTKSTCLALILAGSDTTTITMIWALSLLLNNEESLKKAQLELDEQIGRQRQVKESDIQNLPYLQAIVKETLRLYPAGPLAIPHESTEDCTIAGYYIPARTRLMVNIQKLQRDPQIWENPCEFRPERFLTSRNDFDVRGQSPELIPFGSGRRMCPGISFALQILHLTLANLVHGFEIYRPCDKLLNMEESAGMTSIRKDPLEVFLSPRLQAQVYD | 525 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 21993729 | 21996603 | - | Sed0021602.1 | Sed13g1694 | 735204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1694 | 525 | Pfam | Cytochrome P450 | 43 | 500 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 312 | 329 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 332 | 358 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 375 | 393 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 192 | 210 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 416 | 440 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 72 | 91 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | E-class P450 group I signature | 96 | 117 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | P450 superfamily signature | 376 | 387 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | P450 superfamily signature | 323 | 340 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PRINTS | P450 superfamily signature | 464 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | PANTHER | CYTOCHROME P450 82C3-RELATED | 17 | 521 | IPR050651 | - | |
| Sed13g1694 | 525 | FunFam | Cytochrome P450 82C4 | 32 | 516 | - | - | |
| Sed13g1694 | 525 | CDD | CYP82 | 76 | 518 | - | - | |
| Sed13g1694 | 525 | Gene3D | Cytochrome P450 | 28 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | SUPERFAMILY | Cytochrome P450 | 43 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1694 | 525 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2615 | Sed-Chr1:20032739 | Sed13g1694 | Sed-Chr13:21993729 | 3.80E-212 | dispersed | |
| Sed01g2621 | Sed-Chr1:20264651 | Sed13g1694 | Sed-Chr13:21993729 | 3.10E-121 | dispersed | |
| Sed13g1686 | Sed-Chr13:21859311 | Sed13g1694 | Sed-Chr13:21993729 | 1.10E-174 | dispersed | |
| Sed13g1692 | Sed-Chr13:21961595 | Sed13g1694 | Sed-Chr13:21993729 | 2.50E-285 | dispersed | |
| Sed13g1694 | Sed-Chr13:21993729 | Sed13g1698 | Sed-Chr13:22054675 | 2.00E-165 | dispersed | |
| Sed13g1693 | Sed-Chr13:21985873 | Sed13g1694 | Sed-Chr13:21993729 | 2.00E-184 | tandem | |
| Sed13g1694 | Sed-Chr13:21993729 | Sed13g1695 | Sed-Chr13:22008315 | 1.70E-196 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1694 | - | - | - | 0.0 |