Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1703 | ATGGCGATTGTTACTGATCCTCTTGGGTCTGTGCAGAATCTCGTCCTGGCGCTTCACGCGCCGCCGTACACGGCGGCCGCCGTTCTGGGTGCCGTCTCTTTCTTGGTTTATGTGTTGCTCATCGGCGGTTGGAGGAAGCGACGCCGGGATCTTCTCCCGCCGGTGCCGGCGATTCCGGGGGTGCCATTGCTGGGGAATTTGTTGCAGTTGAAGGAGAAGAAACCTCACAAAACGTTTGCTCAATGGGCCAAGACGTACGGTCCGGTTTATTCCATTAAAACTGGCGCTTCCACTGTGATTGTTCTCAACACCGCCGAGGTCGCCAAAGAGGCTATGGTGACAAGGTACTCTTCAATTTCCAGTAGAAAACTAAGCAAAGCCCTCACCATTTTGACTGCTGATAAATGCATGGTTGCTATGAGTGATTACAATGACTTTCACAAGCTGGTTAAGAAATATATATTAGCAAATGTCTTGGGGGCTAATGCTCAGAAGAGACATAGGCAAAGGAGAGACACCATGATAGGGAATATTTCTAGCCAGTTGTTTGCTCATGTGAAGGATACTCCATCAGCATCAGTTAATTTTCGAAATATCTTCGAATCCGAACTGTTCCAGTTGGCGCTTAAAGAAACACTTGGGAAGGATATCGACTCGATATATGTCGATGGGCTTGGTACAACATTGCCAAGAGAAGATCTGTTCAGAGTTTTAGTGCTCGATCCGATGGAAGGCGCGATCGAGGTTGACTGGAGGGATTTCTTCCCATATTTGAGATGGATTCCCAACAAGAGTGTGGAGGATAAGATCAAGAGGATGTATTTTCGCAGGAAGATGACGATGAAGAGCCTTATCGAGGAGCACAAGAAGCGAATCGTAGCCGGGGAGGAAACAAATTGCTATGCTGATTTCTTGTTATCTGAAGCAAAAACACTTACAGAGGATCAGATAACTATGTTGTTGTGGGAGACAATCATTGAAACCTCAGACACTACTCTGGTTGTAACAGAATGGGCTATGTATGAACTTTCTAAACATACTAAACGACAGGACTATCTATATAAGCATATACAAAGGGTGTGTGGATCTGCAACACTTACCGAAGAAAACCTGTCGCAGCTTCCATATTTGACTGCTGTGTTTCACGAAACTCTTCGGCTGCACAGTCCAGTCCCGGTCGTGCCATTGCGATATGTGCAGGAAGATACCCAGTTAGGAGGGTTCTTTGTTCCTGCAGGGAGTGAGATTGCGGTGAACATTTATGCGTGCAACATGGACGAGGAACATTGGGAAAGCCCTGAGGAATGGAAGCCAGAGAGGTTTCTTGATGAGAAATATGATCCAATGGATCTGCACAAAACCATGGCCTTTGGAGGAGGGAGGAGGGTGTGTGCAGGTGCTCTCAAGGCAATGCTGATAGCTTGCACAACCATTGGAAGGCTAGTTCAAGAGTTTGAGTGGAAGCTGAAGGGAGGAGAAGAGGACAAGGTTGACACGCTCGGACTCACCGCTCGTAAGCTCCAGCCACTGCACGCAATCATAAAGCCGAGAATCAACTGA | 1560 | 47.37 | MAIVTDPLGSVQNLVLALHAPPYTAAAVLGAVSFLVYVLLIGGWRKRRRDLLPPVPAIPGVPLLGNLLQLKEKKPHKTFAQWAKTYGPVYSIKTGASTVIVLNTAEVAKEAMVTRYSSISSRKLSKALTILTADKCMVAMSDYNDFHKLVKKYILANVLGANAQKRHRQRRDTMIGNISSQLFAHVKDTPSASVNFRNIFESELFQLALKETLGKDIDSIYVDGLGTTLPREDLFRVLVLDPMEGAIEVDWRDFFPYLRWIPNKSVEDKIKRMYFRRKMTMKSLIEEHKKRIVAGEETNCYADFLLSEAKTLTEDQITMLLWETIIETSDTTLVVTEWAMYELSKHTKRQDYLYKHIQRVCGSATLTEENLSQLPYLTAVFHETLRLHSPVPVVPLRYVQEDTQLGGFFVPAGSEIAVNIYACNMDEEHWESPEEWKPERFLDEKYDPMDLHKTMAFGGGRRVCAGALKAMLIACTTIGRLVQEFEWKLKGGEEDKVDTLGLTARKLQPLHAIIKPRIN | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 22083083 | 22086096 | + | Sed0020084.1 | Sed13g1703 | 735213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1703 | 519 | FunFam | Ent-kaurene oxidase 2 | 47 | 519 | - | - | |
| Sed13g1703 | 519 | PRINTS | P450 superfamily signature | 327 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PRINTS | P450 superfamily signature | 379 | 390 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PANTHER | ENT-KAURENE OXIDASE, CHLOROPLASTIC | 25 | 517 | IPR044225 | GO:0005506(InterPro)|GO:0005783(PANTHER)|GO:0009686(PANTHER)|GO:0009686(InterPro)|GO:0009707(PANTHER)|GO:0010241(InterPro)|GO:0010241(PANTHER)|GO:0016709(PANTHER)|GO:0020037(InterPro)|GO:0052615(InterPro) | |
| Sed13g1703 | 519 | CDD | CYP77_89 | 85 | 511 | - | - | |
| Sed13g1703 | 519 | SUPERFAMILY | Cytochrome P450 | 51 | 517 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | Gene3D | Cytochrome P450 | 40 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | Pfam | Cytochrome P450 | 59 | 499 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed13g1703 | 519 | PRINTS | E-class P450 group I signature | 83 | 102 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PRINTS | E-class P450 group I signature | 107 | 128 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PRINTS | E-class P450 group I signature | 419 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1703 | 519 | PRINTS | E-class P450 group I signature | 378 | 396 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed13g1703 | Sed-Chr13:22083083 | Sed02g0797 | Sed-Chr2:45657983 | 1.30E-50 | dispersed | |
| Sed01g2626 | Sed-Chr1:20322618 | Sed13g1703 | Sed-Chr13:22083083 | 9.50E-256 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1703 | K04122 | - | csv:101209283 | 889.412 |