Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1733 ATGTCCACTAGGAGTGAACATCATACGGTTCCGCTCTCCGTGCTTCTGAAGCGTGAATTGGCGACTGAAAAGATTGAGAGACCAGAAATCATACATGGTCAAGCGAGTCATAGTAAGAAAGGGGAAGATTTTACATTGATAAAGACGGAGTGCGAGAGAGTGGTCGGAGATGGAGCTACGTATTCAGTTTTTGGTCTTTTTGATGGACATAATGGATCTGCTGCTGCTATTTATTCTAAGGAGAATCTCTTGAACAATGTTCTAGCTGCTATTCCATCAAATCTTAATAGAGATGATTGGATTGCAGCATTGCCAAGGGCCTTGGTTGCAGGTTTTGTGAAGACAGACAAAGATTTACAAGAGAAAGCTCATACATCGGGAACCACTGTCACCTTTATGATCATCGAGGGGTGGTTTGTCACTGTTGCTTCTGTTGGTGATTCCCGTTGCACTTTAGAGTCAGCTGAAGGTGACATCTACTACTTATCCGCAGATCACAGACTAGAATGCAACGAAGAAGAGAGAGAACGTATAATTGCTAGTGGTGGTGAGGTCGGCAGGCTGAATGCTGGTGGTGGTGCAGAGATTGGTCCATTGAGATGCTGGCCTGGTGGCTTGTGTCTATCACGATCGATTGGTGATATGGATATTGGAGAGTTTATAGTGCCTGTTCCTTACGTGAAGCAAGTTAAGCTATCTTCTACTGGTGGTAGGGTTATTATTTCAAGTGATGGAGTTTGGGATGCTATATCTGCTGAAACTGCTTATGATTGTAGTCGGGGGATGGCAACAGAAACTGCTGCTGTACAGATTGTGAAGGAAGCAGTACAGTCAAAGGGACTTCGAGATGATACTACATGTATTGTGATTGACATACTACCAAGGGAAAAACCAACCACTGTTTTGCCGCCACCAAAGAAGCAGGTTAAAGGAATGTTTAAATCAATGTTCCGCAAAAAATCATGCGAATCGTCTTCTCATTTTGAGAAAGAATTTAACGAGCCTGATGTCGTTGAGGAATTATTTGAGGAAGGATCCGCAATGTTGTCAGAAAGGTTAGATGCCAAGTATCCTATCTGCAACATGTTTAATCTGTTCGTATGTGCGGTATGCCAAGTTAAGATCCAACCTCGGGAGGGTATTTCCATATATGCTGGCTCATCTAACAGAGGAAAATTCCGTGCGTGGGATGGACCTTTTCTATGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGACCATCTGGAGATAGACACAGCAGTGGAAGTGACTAG 1284 43.54 MSTRSEHHTVPLSVLLKRELATEKIERPEIIHGQASHSKKGEDFTLIKTECERVVGDGATYSVFGLFDGHNGSAAAIYSKENLLNNVLAAIPSNLNRDDWIAALPRALVAGFVKTDKDLQEKAHTSGTTVTFMIIEGWFVTVASVGDSRCTLESAEGDIYYLSADHRLECNEEERERIIASGGEVGRLNAGGGAEIGPLRCWPGGLCLSRSIGDMDIGEFIVPVPYVKQVKLSSTGGRVIISSDGVWDAISAETAYDCSRGMATETAAVQIVKEAVQSKGLRDDTTCIVIDILPREKPTTVLPPPKKQVKGMFKSMFRKKSCESSSHFEKEFNEPDVVEELFEEGSAMLSERLDAKYPICNMFNLFVCAVCQVKIQPREGISIYAGSSNRGKFRAWDGPFLCSSCQEKKEAMEGKRPSGDRHSSGSD 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22324029 22330687 + Sed0005517.1 Sed13g1733 735243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1733 427 SUPERFAMILY PP2C-like 38 292 IPR036457 -
Sed13g1733 427 CDD PP2Cc 39 292 IPR001932 -
Sed13g1733 427 Gene3D - 31 299 IPR036457 -
Sed13g1733 427 ProSiteProfiles PPM-type phosphatase domain profile. 24 292 IPR001932 -
Sed13g1733 427 Pfam Protein phosphatase 2C 60 278 IPR001932 -
Sed13g1733 427 MobiDBLite consensus disorder prediction 408 427 - -
Sed13g1733 427 PANTHER PROTEIN PHOSPHATASE 33 291 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g1733 427 SMART PP2C_4 26 290 IPR001932 -
Sed13g1733 427 FunFam probable protein phosphatase 2C 12 32 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2652 Sed-Chr1:21139485 Sed13g1733 Sed-Chr13:22324029 7.10E-217 dispersed
Sed07g2105 Sed-Chr7:36563505 Sed13g1733 Sed-Chr13:22324029 3.70E-136 dispersed
Sed07g2106 Sed-Chr7:36563505 Sed13g1733 Sed-Chr13:22324029 3.70E-136 dispersed
Sed13g1733 Sed-Chr13:22324029 Sed13g2205 Sed-Chr13:26558900 7.30E-12 dispersed
Sed01g2651 Sed-Chr1:21139485 Sed13g1733 Sed-Chr13:22324029 7.10E-217 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1733 - - - 0.0