Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1743 ATGTTGGCTAGCCCTGAGGCTGCTAGGTTTGTGTTGACCACCCAGGCTCATTTGTTTAAGCCCACTTATCCCAAAAGTAAAGAGCATTTGATTGGCCCATTTGCCCTGTTTTTTCACCAAGGTGAGTACCATGGTCGGCTTAGGAAATTGGTTCAAAGCTCTCTTTCTTTGGACGCGATTCGGGGATTGGTGCCCGGTATCGACTCTGCCGCTACCTCCGCTCTCGATTCCTGGGTCGGTGGTCACGTTGTTAACACTTTTCATGAGATGAAAAAGATATCATTTGAAGTTGGGATATTGACCATTTTTGGGCATTTGGAAGCTGCTTACAAAGAGGATCTTAAAAAGAACTATAGTATATTGGACTCTGGCTACAATTCTTTTCCCACCAACATTCCTGGAACTCCATACAAAAAGGCACTCTCAGCAAGAAATCGGCTAAATAAAATCATAGGCGATATAATTCATGATAGAAGGGAAAAAAGGGTGGCTGAGAAGGATTTATTGGGGTGTTTTCTAAGGTCCATGGATGAAGAAGGTGAAATTATAAGTGATGCCCAAATAGCAGATAACATAATTGGAGTACTTTTTGCAGCTCAAGACACCACAGCCAGTGTCATGACTTGGATTGTCAAGTACCTTCATGACCAACCTAAACTTCTCCAAACAGTAAAGGCCGAGCAAGAGGAAATTCTAAAATTAAATTGCGAAAATAATCAACGGTTGAATTGGAATCAGACAAGAAACATGCCCATCAGTTACAAGGTGGTATTGGAGAGCTTGAGAATGGCGAGCATTATATCATTCACTTTTAGAGAGGCTGTAGCTGACGTGGAATACAAAGGATTCTTGATTCCAAAAGGTTGGAAAGTGATGCCTTTATTTCGAAACATCCACCACAGTCCAGAATATTTCACTGATCCTCACACATTCGCCCCTTCTAGATTTGAGGCTGCACCTAAACCCAATACTTTCATGCCATTTGGCACGGGAGTCCATGCCTGCCCTGGAAATGAACTTGCCAAGCTGGAGATCTTGATCATGATTCATCATCTAGTCACAAAAGTTAGATGGGAATTGGTTGGTTCGCAAAACGGGGTTCAATATAGTCCATTTCCCGTTCCCTTTCAAGGCCTTCCAGCGAGATTTTGGAAGAAAGCCCACTAG 1167 42.84 MLASPEAARFVLTTQAHLFKPTYPKSKEHLIGPFALFFHQGEYHGRLRKLVQSSLSLDAIRGLVPGIDSAATSALDSWVGGHVVNTFHEMKKISFEVGILTIFGHLEAAYKEDLKKNYSILDSGYNSFPTNIPGTPYKKALSARNRLNKIIGDIIHDRREKRVAEKDLLGCFLRSMDEEGEIISDAQIADNIIGVLFAAQDTTASVMTWIVKYLHDQPKLLQTVKAEQEEILKLNCENNQRLNWNQTRNMPISYKVVLESLRMASIISFTFREAVADVEYKGFLIPKGWKVMPLFRNIHHSPEYFTDPHTFAPSRFEAAPKPNTFMPFGTGVHACPGNELAKLEILIMIHHLVTKVRWELVGSQNGVQYSPFPVPFQGLPARFWKKAH 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22400999 22406942 - Sed0012587.2 Sed13g1743 735253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1743 388 PRINTS P450 superfamily signature 198 215 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PRINTS P450 superfamily signature 255 266 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PRINTS P450 superfamily signature 326 335 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PRINTS P450 superfamily signature 335 346 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 SUPERFAMILY Cytochrome P450 2 384 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 Pfam Cytochrome P450 2 361 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 Gene3D Cytochrome P450 1 385 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PANTHER CYTOCHROME P450 26 2 356 - GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Sed13g1743 388 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 328 337 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed13g1743 388 CDD CYP90-like 1 382 - -
Sed13g1743 388 PRINTS E-class P450 group I signature 325 335 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PRINTS E-class P450 group I signature 207 233 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PRINTS E-class P450 group I signature 187 204 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PRINTS E-class P450 group I signature 254 272 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PRINTS E-class P450 group I signature 294 318 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1743 388 PRINTS E-class P450 group I signature 335 358 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0142 Sed-Chr10:906840 Sed13g1743 Sed-Chr13:22400999 3.50E-13 dispersed
Sed10g1255 Sed-Chr10:27194885 Sed13g1743 Sed-Chr13:22400999 3.60E-153 dispersed
Sed13g1742 Sed-Chr13:22400999 Sed13g1743 Sed-Chr13:22400999 4.00E-229 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1743 K09843 - csv:101213916 682.945