Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1761 | ATGGAAAATGATCATCATCTTAAATCTGATGATCAGATGGAGATTATCATGATGATGCAACAAGAATTCTACAGCTCTTACAACGATCTGTCGCGTCCGTTCTTCATGAACAACCCGCCGATGGAAGAACCCTCCGCGTTGGCGCAAACACCTTCATTCCCCTCCGCTTCTTCACGGTGGCGAAACCCGATGCTTTCGGAGGCGCAGAAGCAGCGATCGGTGGCGGCGATGAGGGAGATGATATTCCGAATGGCAGCGATGCAGCCAATTCACATAGACCCGGAATCGGTTAAGCCGCCAAAGAGAAGAAACGTGAAGATTTCGACCGACCCGCAGAGCGTAGCTGCTCGACATAGGAGGGAAAGAATAAGCGAGAGGATTAGGATACTTCAAAGACTGGTTCCTGGAGGTACCAAAATGGACACGGCTTCGATGCTGGACGAGGCCATACACTACGTAAAGTTCTTGAAGACACAAGTGCAGTCGCTCCAACGAGCTGCGGCGAACAGGCCAAACGGTACCCGCGGTGGCGGCAGCAGCAGCAGCGTAGGGTTTCCTTTGGAAATGTCAAGTGGAAGCTGCTATGTTCCCATGGCCAAACCTTCCCCAATGGCTCACAATGTTGAGCAATTTGGAGATGGTTAA | 645 | 51.32 | MENDHHLKSDDQMEIIMMMQQEFYSSYNDLSRPFFMNNPPMEEPSALAQTPSFPSASSRWRNPMLSEAQKQRSVAAMREMIFRMAAMQPIHIDPESVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLQRAAANRPNGTRGGGSSSSVGFPLEMSSGSCYVPMAKPSPMAHNVEQFGDG | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 22619005 | 22619649 | - | Sed0004269.1 | Sed13g1761 | 735271 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1761 | 214 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 26 | 205 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g1761 | 214 | FunFam | BHLH transcription factor | 110 | 173 | - | - | |
Sed13g1761 | 214 | MobiDBLite | consensus disorder prediction | 93 | 119 | - | - | |
Sed13g1761 | 214 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 107 | 156 | IPR011598 | GO:0046983(InterPro) | |
Sed13g1761 | 214 | Pfam | Helix-loop-helix DNA-binding domain | 116 | 157 | IPR011598 | GO:0046983(InterPro) | |
Sed13g1761 | 214 | Gene3D | - | 110 | 173 | IPR036638 | GO:0046983(InterPro) | |
Sed13g1761 | 214 | SMART | finulus | 113 | 162 | IPR011598 | GO:0046983(InterPro) | |
Sed13g1761 | 214 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 112 | 165 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2507 | Sed-Chr3:34162522 | Sed13g1761 | Sed-Chr13:22619005 | 4.10E-20 | dispersed | |
Sed09g1706 | Sed-Chr9:40320560 | Sed13g1761 | Sed-Chr13:22619005 | 1.20E-29 | dispersed | |
Sed13g1761 | Sed-Chr13:22619005 | Sed14g0223 | Sed-Chr14:2454099 | 2.40E-32 | dispersed | |
Sed01g0473 | Sed-Chr1:3643380 | Sed13g1761 | Sed-Chr13:22619005 | 2.20E-38 | transposed | |
Sed10g1240 | Sed-Chr10:26677131 | Sed13g1761 | Sed-Chr13:22619005 | 6.30E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40454 | PF00010 | HLH | 1.30E-06 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1761 | - | - | - | 0.0 |