Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1761 ATGGAAAATGATCATCATCTTAAATCTGATGATCAGATGGAGATTATCATGATGATGCAACAAGAATTCTACAGCTCTTACAACGATCTGTCGCGTCCGTTCTTCATGAACAACCCGCCGATGGAAGAACCCTCCGCGTTGGCGCAAACACCTTCATTCCCCTCCGCTTCTTCACGGTGGCGAAACCCGATGCTTTCGGAGGCGCAGAAGCAGCGATCGGTGGCGGCGATGAGGGAGATGATATTCCGAATGGCAGCGATGCAGCCAATTCACATAGACCCGGAATCGGTTAAGCCGCCAAAGAGAAGAAACGTGAAGATTTCGACCGACCCGCAGAGCGTAGCTGCTCGACATAGGAGGGAAAGAATAAGCGAGAGGATTAGGATACTTCAAAGACTGGTTCCTGGAGGTACCAAAATGGACACGGCTTCGATGCTGGACGAGGCCATACACTACGTAAAGTTCTTGAAGACACAAGTGCAGTCGCTCCAACGAGCTGCGGCGAACAGGCCAAACGGTACCCGCGGTGGCGGCAGCAGCAGCAGCGTAGGGTTTCCTTTGGAAATGTCAAGTGGAAGCTGCTATGTTCCCATGGCCAAACCTTCCCCAATGGCTCACAATGTTGAGCAATTTGGAGATGGTTAA 645 51.32 MENDHHLKSDDQMEIIMMMQQEFYSSYNDLSRPFFMNNPPMEEPSALAQTPSFPSASSRWRNPMLSEAQKQRSVAAMREMIFRMAAMQPIHIDPESVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLQRAAANRPNGTRGGGSSSSVGFPLEMSSGSCYVPMAKPSPMAHNVEQFGDG 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22619005 22619649 - Sed0004269.1 Sed13g1761 735271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1761 214 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 205 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1761 214 FunFam BHLH transcription factor 110 173 - -
Sed13g1761 214 MobiDBLite consensus disorder prediction 93 119 - -
Sed13g1761 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 156 IPR011598 GO:0046983(InterPro)
Sed13g1761 214 Pfam Helix-loop-helix DNA-binding domain 116 157 IPR011598 GO:0046983(InterPro)
Sed13g1761 214 Gene3D - 110 173 IPR036638 GO:0046983(InterPro)
Sed13g1761 214 SMART finulus 113 162 IPR011598 GO:0046983(InterPro)
Sed13g1761 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 165 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2507 Sed-Chr3:34162522 Sed13g1761 Sed-Chr13:22619005 4.10E-20 dispersed
Sed09g1706 Sed-Chr9:40320560 Sed13g1761 Sed-Chr13:22619005 1.20E-29 dispersed
Sed13g1761 Sed-Chr13:22619005 Sed14g0223 Sed-Chr14:2454099 2.40E-32 dispersed
Sed01g0473 Sed-Chr1:3643380 Sed13g1761 Sed-Chr13:22619005 2.20E-38 transposed
Sed10g1240 Sed-Chr10:26677131 Sed13g1761 Sed-Chr13:22619005 6.30E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40454 PF00010 HLH 1.30E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1761 - - - 0.0