Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1770 ATGGAAGGAGAAGTTTGCTCATCGCCGAAGAGGAAGCAAAGGCACCAACAAGAAAAGCCCTACCGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTTGCCGAAATCCGAGAGCCAAACAAACGCTCCCGGATTTGGCTTGGTTCCTACACAACCCCCGTCGCCGCCGCCCGAGCTTACGACACCGCCGTCTTCTACCTTCGTGGCCCTTCTGCTCGCCTCAACTTCCCCGATTTGATCTTCGAGGACGACCAGCTGGACGACATGTCGGCCGCCTCGATAAGGAAAAGAGCTACCGAAGTTGGTGCGAGGGTTGATGCTATCCAAACCTCGCACCATGGCTCGAACTCGAGCACTCAAGTTATCGAGAAGCCCGATTTGAACGAGTACCCCAACCCCGAAAGCTCCGACGACGATTGA 420 55.48 MEGEVCSSPKRKQRHQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPDLIFEDDQLDDMSAASIRKRATEVGARVDAIQTSHHGSNSSTQVIEKPDLNEYPNPESSDDD 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22730158 22731063 - Sed0013453.1 Sed13g1770 735280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1770 139 CDD AP2 21 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1770 139 MobiDBLite consensus disorder prediction 1 21 - -
Sed13g1770 139 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1770 139 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677(InterPro)
Sed13g1770 139 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1770 139 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1770 139 SMART rav1_2 20 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1770 139 Pfam AP2 domain 21 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1770 139 MobiDBLite consensus disorder prediction 106 139 - -
Sed13g1770 139 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 138 - -
Sed13g1770 139 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Sed13g1770 139 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1770 139 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1770 Sed-Chr13:22730158 Sed13g1932 Sed-Chr13:24194781 1.50E-19 dispersed
Sed01g2682 Sed-Chr1:21493109 Sed13g1770 Sed-Chr13:22730158 1.10E-49 wgd
Sed10g0653 Sed-Chr10:4487343 Sed13g1770 Sed-Chr13:22730158 1.30E-39 wgd
Sed11g0932 Sed-Chr11:23467725 Sed13g1770 Sed-Chr13:22730158 1.10E-43 wgd
Sed13g1770 Sed-Chr13:22730158 Sed14g0864 Sed-Chr14:17345118 9.90E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40456 PF00847 AP2 1.90E-11 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1770 K09286 - csv:101219005 249.595