Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1775 ATGCCCCTCAACAACAACATGGCTGTTGAGTTAATGGTAGGGTTCGAAAACGCAAATTTCACACCCAAAATCGAAGAAAATACAGCAGTTTCAGCGGTTCAAGAAGCCACTTCAGCTGGGATTCAAAGCGTAGAGAATTTCCTAAACTTAATCGCTCAAACCCCAAATCAACACCACGAAGCAATCGCCAATTCCGTCGTCAACAACTTCAAAAAGGTCATTACTTTACTCGACCGAAGCCGGACCGGCCACGCCCGGTTCCGAAGAGCTCCGATTCTTTCCCCTCCCCCGCCGCCGCCGCCGCCGCCGAAGAAACACGAACCGGTCTCTGCTTTCAAGGTTTACTGTCCAACGCCTTCCTCTGTTTCTCGATTGCCTCCTCTGCCTCATCACCCTAATGGGTTTTCCTCTGTTCTCAAAATCGGATCTTTGGATCGGAAGGATTCGACCAATACCATCAATTTCGCAGCGTCGCCGCCGGTTTCGGCGGCGAATTCGTACGTTTCGTCGTTGACCGGCGACACGGAAAGTCAACAGCCGTCGTCTCTTTCATCTGGGTTTCAGTTTACTCATATGTCTCAGGTCTCTTCCGCCGGAAAACCGCCTCTTTCTTCGTCGTCGTTGAAGAGGAAATGCTTTTCTATGGATGATTCCGCCGTCAAGTGTGGATCTTCTTCCGGCCGGTGTCATTGTTCCAAGAAAAGCAGGAAAAATCGAACGAAGAAAGTGATTAGGGTTCCGGCGGTTAGTTCGAAACTTTCCGATATCCCGCCGGACGATTACTCGTGGAGAAAGTACGGCCAGAAACCCATTAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTTTAAGAGGCTGCCCAGCACGGAAACACGTAGAACGGGCCTTAGACGATCCAACCATGCTCATTGTAACTTACGAAAACGATCACAATCACGCCCTCTCCACCGAAACGCCTGCCTCGCTTGTTCTCGAATCATCCTAA 993 50.15 MPLNNNMAVELMVGFENANFTPKIEENTAVSAVQEATSAGIQSVENFLNLIAQTPNQHHEAIANSVVNNFKKVITLLDRSRTGHARFRRAPILSPPPPPPPPPKKHEPVSAFKVYCPTPSSVSRLPPLPHHPNGFSSVLKIGSLDRKDSTNTINFAASPPVSAANSYVSSLTGDTESQQPSSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCFSMDDSAVKCGSSSGRCHCSKKSRKNRTKKVIRVPAVSSKLSDIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHALSTETPASLVLESS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22795985 22798633 - Sed0023573.1 Sed13g1775 735285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1775 330 MobiDBLite consensus disorder prediction 91 107 - -
Sed13g1775 330 MobiDBLite consensus disorder prediction 87 108 - -
Sed13g1775 330 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g1775 330 MobiDBLite consensus disorder prediction 166 185 - -
Sed13g1775 330 Pfam Plant zinc cluster domain 209 255 IPR018872 -
Sed13g1775 330 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 318 IPR044810 GO:0003700(InterPro)
Sed13g1775 330 FunFam WRKY transcription factor 65 241 318 - -
Sed13g1775 330 Gene3D WRKY domain 243 318 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g1775 330 SUPERFAMILY WRKY DNA-binding domain 255 317 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g1775 330 Pfam WRKY DNA -binding domain 259 315 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g1775 330 SMART WRKY_cls 257 317 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0412 Sed-Chr1:3116447 Sed13g1775 Sed-Chr13:22795985 8.80E-59 dispersed
Sed01g2686 Sed-Chr1:21514376 Sed13g1775 Sed-Chr13:22795985 1.30E-109 dispersed
Sed09g1075 Sed-Chr9:34485054 Sed13g1775 Sed-Chr13:22795985 1.50E-46 dispersed
Sed13g0849 Sed-Chr13:6219991 Sed13g1775 Sed-Chr13:22795985 1.40E-23 dispersed
Sed13g1775 Sed-Chr13:22795985 Sed13g2093 Sed-Chr13:25655946 3.50E-54 dispersed
Sed01g2685 Sed-Chr1:21514376 Sed13g1775 Sed-Chr13:22795985 7.20E-108 wgd
Sed10g0657 Sed-Chr10:4510509 Sed13g1775 Sed-Chr13:22795985 1.10E-66 wgd
Sed13g1775 Sed-Chr13:22795985 Sed14g0865 Sed-Chr14:17452343 1.90E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40457 PF03106 WRKY 3.10E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1775 - - - 0.0