Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1782 ATGGCCCATGATTTATGTCTGCTGACTGCTGATTATAAGCACAAGAGGCTCCCAATTCAGAAGCATATCTTCCTTCCAAACCCTGCCCTCACCCATGAGAAGAAAATGAGAAACTATAGGATGGCTAAACAGCATTGTTACCCAATCTCAATTCAACACTCAATTTCAGGTCACCAAAAACCTTCATTTCTTCTTGATTCCCTCTATTGTTTAGAGGAAGGGATTGGAGATAACCTCATACCTCCAAAGGACCAAGCTTTCTCAGTAAATGTTAACATCAATTCCCCAAATTCTGTCCTCTTGTCAGAGAGGGACTTTCTTTGGGAACATGAAGAATTGGTGTCTCTGTTCTCTAAAGAGAATGAACACAAACTCCACAACACTCTCCCACTTAATCCCTCTTTAGCAGCGGCTCGCTCCAAGGCTGTCAATTGGATTCTAAAGGTCAATTCTCATTACCATTTCACTGCGCTCACCGCCGTTTTCGCCGTCGATTATGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAAACTGGTAAGCCCTGGATGACTCATCTCACCGCCATTGCTTGTTTATCGCTCGCCGCTAAAGTCGAGGAAACTCGAGTTCCTCTTCTTTTAGACCTTCAGGTGGAGGAAAATGAATACTATTTTGAAGCTAAAACCATTGCAAGAATGGAAATTCTTGTTCTATCTACGCTTGTTTGGAGAATGAATCCTGTGAACCCACTTTCATTTCTGGACTACATTGTCAGGCGGCTAGGCCTCAAGGACCAGCTCTGTTCTGAATTTCTCTGTAGATGTGAACAATTACTTCTCTCTGTCATTTTAGGTAAGCTACAAAAATTCACATAA 855 42.57 MAHDLCLLTADYKHKRLPIQKHIFLPNPALTHEKKMRNYRMAKQHCYPISIQHSISGHQKPSFLLDSLYCLEEGIGDNLIPPKDQAFSVNVNINSPNSVLLSERDFLWEHEELVSLFSKENEHKLHNTLPLNPSLAAARSKAVNWILKVNSHYHFTALTAVFAVDYVDRFLSSPHFQTGKPWMTHLTAIACLSLAAKVEETRVPLLLDLQVEENEYYFEAKTIARMEILVLSTLVWRMNPVNPLSFLDYIVRRLGLKDQLCSEFLCRCEQLLLSVILGKLQKFT 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22857081 22858149 + Sed0026839.2 Sed13g1782 735292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1782 284 ProSitePatterns Cyclins signature. 139 170 IPR048258 -
Sed13g1782 284 FunFam D6-type cyclin 122 239 - -
Sed13g1782 284 PANTHER CYCLINS 112 267 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed13g1782 284 Gene3D - 137 239 - -
Sed13g1782 284 SMART cyclin_7 144 232 IPR013763 -
Sed13g1782 284 CDD CYCLIN_AtCycD-like_rpt1 138 236 - -
Sed13g1782 284 SUPERFAMILY Cyclin-like 108 239 IPR036915 -
Sed13g1782 284 Gene3D - 240 272 - -
Sed13g1782 284 Pfam Cyclin, N-terminal domain 127 239 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1782 Sed-Chr13:22857081 Sed14g0876 Sed-Chr14:17592829 1.60E-39 dispersed
Sed13g1781 Sed-Chr13:22857081 Sed13g1782 Sed-Chr13:22857081 8.60E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1782 K14505 - csv:101218302 358.607