Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1788 ATGAAGAAGGCCTGGACCGAGATAAACGAGTCCGTCGGAGACCAACGCCTCGTCGAAGAAGCCGATCTCAACAAGCTACACTACCTTAAAGCCATAATCAACGAGACGTACCGGTTGTTTCCAGCCCTACCGGTATTGATTGCGCGAGAGTCTATAGAAGACTGCACAATCGGAGGCTACAACGTACCAAAAGGAACCATGTTATTAGTGAATGCATGGACGATCCATCGAGACCCAAAAGTGTGGCCCGATCCCACTTGCTTTCGACCGGAACGGTTTGGAGAGGGGGAAACCATGGAAGCGAGTAAATTGTTGTCGTTTGGAATGGGGAGAAGGGCTTGTCCTGGAGGTGGGCTAGCCTACAGGGTGGTGGCATTGGCGCTGGCTAGTATGATTCAGTGCTTTGAGTGGGAAAGGCTGGACCAAAAGGAAGTGGATTTGTCTCAAGGAATTGGACTCACCATGCCAAAAGCTAGCCCTTTGGTGGCTATGTGCAAACCTCGTAATTCCATGCTTCATTTACTATCCCAACTTTGA 537 49.91 MKKAWTEINESVGDQRLVEEADLNKLHYLKAIINETYRLFPALPVLIARESIEDCTIGGYNVPKGTMLLVNAWTIHRDPKVWPDPTCFRPERFGEGETMEASKLLSFGMGRRACPGGGLAYRVVALALASMIQCFEWERLDQKEVDLSQGIGLTMPKASPLVAMCKPRNSMLHLLSQL 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22942308 22942844 - Sed0024343.1 Sed13g1788 735298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1788 178 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 107 116 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed13g1788 178 PRINTS E-class P450 group I signature 114 137 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 PRINTS E-class P450 group I signature 71 95 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 PRINTS E-class P450 group I signature 30 48 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 PRINTS E-class P450 group I signature 104 114 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 Pfam Cytochrome P450 2 157 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 Gene3D Cytochrome P450 1 171 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 PRINTS P450 superfamily signature 105 114 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 PRINTS P450 superfamily signature 114 125 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 SUPERFAMILY Cytochrome P450 1 168 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1788 178 PANTHER CYTOCHROME P450 82C3-RELATED 1 170 IPR050651 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1788 Sed-Chr13:22942308 Sed01g2698 Sed-Chr1:21603718 2.20E-55 dispersed
Sed13g1788 Sed-Chr13:22942308 Sed13g1793 Sed-Chr13:22975412 1.50E-48 proximal
Sed13g1787 Sed-Chr13:22916394 Sed13g1788 Sed-Chr13:22942308 1.00E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1788 - - - 0.0