Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1791 ATGGCGGACAAGGAGAATATATTCCGAGTTACTCGTAGTTCCAAGAAGAGGCCCGCCGAGGCTGTTATCTCCGACGACCGCTCGGCTAACAAGAGGAGGGTCGTTCTTGGCGAGCTTCCTATTTTACACAATGCTTCTTCTTCCCTTGATCGGAAATTTAACCCCAGAGCCAACCGCCGGCGGAGGAGGGCGAAATCGAGGGATACGGCCGGGACGAGTGCTGCTGTTCAAATCAGTACTGCTATGGAAGACGATGTCAAGTTGTCGGATGAGGCTAAATCCGATGAACCGCAAATGTGTAGGGTTTACGCTCCTGATATTTATGAGTATCTTCGCGCTATGGAGACTGATCCAAGAAGAAGACCAATACCAGATTATATTGGGAGGGTACAAAAAGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGATGGTTGAAGTTGCAGACGAATTCAAGCTTGTTTCAGATACTCTTTACCTCTCGGTTTCGTATATTGACAGATATTTATCTCTAAATGCAATCAGCAGGCAGAAACTTCAGTTGCTGGGGGTCTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATTAGCCCCCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACACTAGAGAAGAGGTGGTTGAGATGGAGTCTGATGTATTGAAGTCGCTGGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTGAGGAGATTCACAATGGTTGCTCAAGAGACTTATGAATTTAATACTCTACAATTTGAATTCTTGTGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTTTAGCACGATTTATGATCCAATTGAAGAGGCATCCTTGGACTTCCAGGTTGGAGCATTTTACTGGATATAAGCCGGTTGATGTTAAAGATTGCGTTGTACATGTACATGATTTGTACCTTAGTAGAAGAGGAGGCTCTTTGTCAGCTATAAGAGAGAAATACAAACAGCATAAGTACAAATTTGTGTCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1122 42.34 MADKENIFRVTRSSKKRPAEAVISDDRSANKRRVVLGELPILHNASSSLDRKFNPRANRRRRRAKSRDTAGTSAAVQISTAMEDDVKLSDEAKSDEPQMCRVYAPDIYEYLRAMETDPRRRPIPDYIGRVQKDISANMRGILVDWMVEVADEFKLVSDTLYLSVSYIDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYTREEVVEMESDVLKSLEFELGNPTIKTFLRRFTMVAQETYEFNTLQFEFLCYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQLKRHPWTSRLEHFTGYKPVDVKDCVVHVHDLYLSRRGGSLSAIREKYKQHKYKFVSVMPSPPEIPIPYFEDVRI 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22959380 22965006 - Sed0016093.1 Sed13g1791 735301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1791 373 ProSitePatterns Cyclins signature. 139 170 IPR048258 -
Sed13g1791 373 Gene3D - 106 356 - -
Sed13g1791 373 SMART Cyclin_C_2 237 360 IPR004367 -
Sed13g1791 373 PANTHER CYCLINS 87 348 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed13g1791 373 FunFam Cyclin A1 224 356 - -
Sed13g1791 373 FunFam Mitotic cyclin 6 122 222 - -
Sed13g1791 373 SMART cyclin_7 241 329 IPR013763 -
Sed13g1791 373 SMART cyclin_7 144 228 IPR013763 -
Sed13g1791 373 MobiDBLite consensus disorder prediction 50 74 - -
Sed13g1791 373 Pfam Cyclin, C-terminal domain 237 359 IPR004367 -
Sed13g1791 373 CDD CYCLIN_AtCycA-like_rpt2 237 351 - -
Sed13g1791 373 PIRSF Cyclin_A_B_D_E 3 364 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed13g1791 373 Gene3D - 120 235 - -
Sed13g1791 373 Pfam Cyclin, N-terminal domain 106 234 IPR006671 -
Sed13g1791 373 SUPERFAMILY Cyclin-like 95 234 IPR036915 -
Sed13g1791 373 SUPERFAMILY Cyclin-like 237 362 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0426 Sed-Chr3:2533557 Sed13g1791 Sed-Chr13:22959380 1.50E-85 dispersed
Sed03g0427 Sed-Chr3:2534219 Sed13g1791 Sed-Chr13:22959380 1.50E-85 dispersed
Sed13g1791 Sed-Chr13:22959380 Sed13g2048 Sed-Chr13:25269435 1.40E-72 dispersed
Sed13g1789 Sed-Chr13:22950397 Sed13g1791 Sed-Chr13:22959380 5.30E-200 proximal
Sed13g1791 Sed-Chr13:22959380 Sed13g1792 Sed-Chr13:22959380 1.10E-208 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1791 K06627 - csv:101207493 622.468