Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1791 | ATGGCGGACAAGGAGAATATATTCCGAGTTACTCGTAGTTCCAAGAAGAGGCCCGCCGAGGCTGTTATCTCCGACGACCGCTCGGCTAACAAGAGGAGGGTCGTTCTTGGCGAGCTTCCTATTTTACACAATGCTTCTTCTTCCCTTGATCGGAAATTTAACCCCAGAGCCAACCGCCGGCGGAGGAGGGCGAAATCGAGGGATACGGCCGGGACGAGTGCTGCTGTTCAAATCAGTACTGCTATGGAAGACGATGTCAAGTTGTCGGATGAGGCTAAATCCGATGAACCGCAAATGTGTAGGGTTTACGCTCCTGATATTTATGAGTATCTTCGCGCTATGGAGACTGATCCAAGAAGAAGACCAATACCAGATTATATTGGGAGGGTACAAAAAGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGATGGTTGAAGTTGCAGACGAATTCAAGCTTGTTTCAGATACTCTTTACCTCTCGGTTTCGTATATTGACAGATATTTATCTCTAAATGCAATCAGCAGGCAGAAACTTCAGTTGCTGGGGGTCTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATTAGCCCCCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACACTAGAGAAGAGGTGGTTGAGATGGAGTCTGATGTATTGAAGTCGCTGGAATTTGAACTTGGAAATCCCACAATAAAGACATTTTTGAGGAGATTCACAATGGTTGCTCAAGAGACTTATGAATTTAATACTCTACAATTTGAATTCTTGTGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTTATATTTTTAGCACGATTTATGATCCAATTGAAGAGGCATCCTTGGACTTCCAGGTTGGAGCATTTTACTGGATATAAGCCGGTTGATGTTAAAGATTGCGTTGTACATGTACATGATTTGTACCTTAGTAGAAGAGGAGGCTCTTTGTCAGCTATAAGAGAGAAATACAAACAGCATAAGTACAAATTTGTGTCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA | 1122 | 42.34 | MADKENIFRVTRSSKKRPAEAVISDDRSANKRRVVLGELPILHNASSSLDRKFNPRANRRRRRAKSRDTAGTSAAVQISTAMEDDVKLSDEAKSDEPQMCRVYAPDIYEYLRAMETDPRRRPIPDYIGRVQKDISANMRGILVDWMVEVADEFKLVSDTLYLSVSYIDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYTREEVVEMESDVLKSLEFELGNPTIKTFLRRFTMVAQETYEFNTLQFEFLCYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQLKRHPWTSRLEHFTGYKPVDVKDCVVHVHDLYLSRRGGSLSAIREKYKQHKYKFVSVMPSPPEIPIPYFEDVRI | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 22959380 | 22965006 | - | Sed0016093.1 | Sed13g1791 | 735301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1791 | 373 | ProSitePatterns | Cyclins signature. | 139 | 170 | IPR048258 | - | |
Sed13g1791 | 373 | Gene3D | - | 106 | 356 | - | - | |
Sed13g1791 | 373 | SMART | Cyclin_C_2 | 237 | 360 | IPR004367 | - | |
Sed13g1791 | 373 | PANTHER | CYCLINS | 87 | 348 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Sed13g1791 | 373 | FunFam | Cyclin A1 | 224 | 356 | - | - | |
Sed13g1791 | 373 | FunFam | Mitotic cyclin 6 | 122 | 222 | - | - | |
Sed13g1791 | 373 | SMART | cyclin_7 | 241 | 329 | IPR013763 | - | |
Sed13g1791 | 373 | SMART | cyclin_7 | 144 | 228 | IPR013763 | - | |
Sed13g1791 | 373 | MobiDBLite | consensus disorder prediction | 50 | 74 | - | - | |
Sed13g1791 | 373 | Pfam | Cyclin, C-terminal domain | 237 | 359 | IPR004367 | - | |
Sed13g1791 | 373 | CDD | CYCLIN_AtCycA-like_rpt2 | 237 | 351 | - | - | |
Sed13g1791 | 373 | PIRSF | Cyclin_A_B_D_E | 3 | 364 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Sed13g1791 | 373 | Gene3D | - | 120 | 235 | - | - | |
Sed13g1791 | 373 | Pfam | Cyclin, N-terminal domain | 106 | 234 | IPR006671 | - | |
Sed13g1791 | 373 | SUPERFAMILY | Cyclin-like | 95 | 234 | IPR036915 | - | |
Sed13g1791 | 373 | SUPERFAMILY | Cyclin-like | 237 | 362 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0426 | Sed-Chr3:2533557 | Sed13g1791 | Sed-Chr13:22959380 | 1.50E-85 | dispersed | |
Sed03g0427 | Sed-Chr3:2534219 | Sed13g1791 | Sed-Chr13:22959380 | 1.50E-85 | dispersed | |
Sed13g1791 | Sed-Chr13:22959380 | Sed13g2048 | Sed-Chr13:25269435 | 1.40E-72 | dispersed | |
Sed13g1789 | Sed-Chr13:22950397 | Sed13g1791 | Sed-Chr13:22959380 | 5.30E-200 | proximal | |
Sed13g1791 | Sed-Chr13:22959380 | Sed13g1792 | Sed-Chr13:22959380 | 1.10E-208 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1791 | K06627 | - | csv:101207493 | 622.468 |