Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1799 ATGGATTCTTTCGAATGGGATTTGTGCAGCTCAATTTTATCATTGGAAGAGTTCGATTGTACGCCGATTCCCGAATCGACCCCCGGGATTGGTGATGCATGGTTATATTCTTTGGATTCATGTGTTCTTGGAGCTAATAGAGATGAAAGTGAAAATGGTGTTGATCAATTTTCTTGTATTGATGCTAATAATTATAATCATATGTCCATGTATGGTGGTGTGATTGAAGAAGAGAAGAAAATGGAGTCCATTTTATCAGCTTGTAGTGACATTTTGCTGCAAGAGATCAATGGTTTTAGCAATGAAGATAGCTTTTTAAACATGGAGGTTGAAATCCACCATGGGGGTAATGTTGGTAATCTTGCAAATGAATTGCACCACAAAAGGAAATTTATTGGTGTTCTTGATGGTGATGATGATGAGACAAAGGTCAACCCCATCAAGAAAATTCGTGCTTCAAACAATAGAACCAGGAAAGACAAACAATCCAATTCCAAGGCCAAACAGAAATTGAGCAATAATGACCAAAGCAAATGTGAAGAAGAATTAGAGGAAAATGGTGGGCCAGAAATGTACAGCTGCAGTGTTGATAACTCATCAGAGGATGATAATGCTTCACAAGATACTAATAATAATAATAATGGTGACACAATTAATTTACCTGCAAAATCCAAATCCAAGACAAGAGCCACTAGAGGCTCAGCTACTGATCCACAAAGCATTTACGCTAGGAAGAGAAGAGAGAGAATCAATGAGCGGCTCAAAATTTTGCAGACTCTTGTCCCTAATGGAACTAAGGTTGACATTAGCACAATGCTTGAAGAAGCAGTTCATTACGTCAAGTTTCTGCAGCTTCAGATAAAGCTTTTGAGTTCTGATGAGTTGTGGATGTATGCTCCAATTGCTTACAATGGAATGGATATTGGTCTGCAACAGAAGCTTTCTTCAATTTTGTGA 957 38.04 MDSFEWDLCSSILSLEEFDCTPIPESTPGIGDAWLYSLDSCVLGANRDESENGVDQFSCIDANNYNHMSMYGGVIEEEKKMESILSACSDILLQEINGFSNEDSFLNMEVEIHHGGNVGNLANELHHKRKFIGVLDGDDDETKVNPIKKIRASNNRTRKDKQSNSKAKQKLSNNDQSKCEEELEENGGPEMYSCSVDNSSEDDNASQDTNNNNNGDTINLPAKSKSKTRATRGSATDPQSIYARKRRERINERLKILQTLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSIL 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23005146 23008101 + Sed0016645.1 Sed13g1799 735309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1799 318 MobiDBLite consensus disorder prediction 192 238 - -
Sed13g1799 318 Pfam Helix-loop-helix DNA-binding domain 244 284 IPR011598 GO:0046983(InterPro)
Sed13g1799 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 300 IPR036638 GO:0046983(InterPro)
Sed13g1799 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 107 306 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed13g1799 318 MobiDBLite consensus disorder prediction 145 239 - -
Sed13g1799 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983(InterPro)
Sed13g1799 318 FunFam Basic helix-loop-helix transcription factor 235 292 - -
Sed13g1799 318 CDD bHLH_AtIND_like 235 297 - -
Sed13g1799 318 SMART finulus 240 289 IPR011598 GO:0046983(InterPro)
Sed13g1799 318 Gene3D - 238 292 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2626 Sed-Chr5:37878677 Sed13g1799 Sed-Chr13:23005146 8.50E-37 dispersed
Sed12g2300 Sed-Chr12:33179441 Sed13g1799 Sed-Chr13:23005146 3.90E-17 dispersed
Sed13g1799 Sed-Chr13:23005146 Sed08g1273 Sed-Chr8:26496972 6.90E-15 dispersed
Sed13g0445 Sed-Chr13:3024975 Sed13g1799 Sed-Chr13:23005146 7.70E-38 wgd
Sed13g1799 Sed-Chr13:23005146 Sed07g1264 Sed-Chr7:9507937 5.20E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40459 PF00010 HLH 2.40E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1799 - - - 0.0