Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1802 | ATGGAGAGTTATTTGAACGAGAATTTCGGGGATGTGAAGCCGAAGAACTCGACGGATGAAGCGCTGCAAAGATGGCGGCGACTTTGCTGGTTGGTGAAGAATCGGAAAAGAAGGTTTCGATTTACTGCTAATCTTTCCAAACGATTTGAGGCCGATGCTATTCGACGCTCCAATCAGGAGAAGTTCAGAGTTGCAGTTTTGGTTTCACAAGCAGCACTTCAGTTCATCAATGGGTTGGATTTATCTGCTGATTATGTTGTGCCCGAAGAGGTCAGACAAGCAGGATTTAAAATTTGTGCGGATGAAGCAGGCACCATTGTCGATGGCCGTGACATGAAGAAGCTTAAGATTCATGGGGGTGCTGAGGGTATTGCAACTAAGCTTGCCACATCAACGGAGACAGGCATTCCTACTACAGATCATTTGATCAAGAAAAGACAAGAAATTTATGGAATTAACAAATTCACAGAATGCCCATCTCGAGGATTTTGGCTCTTTGTTTGGGAAGCTCTCCAGGATACTACTCTAATGATACTCGCTTTCTGTGCTGTAGTTTCCCTTCTTGTTGGCATAGTGATGGAAGGATGGCCGAAGGGTGCTCATGATGGGCTTGGCATTGCTGCAAGTATCTTGCTTGTTGTATTTGTTACAGCTACCAGTGACTATAGGCAATCACTTCAGTTTAAGGATTTGGACAAGGAAAAGAAGAAAATTTCAGTTCAGGTTACCAGAAATGGGTTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATATTGTTCATCTTGCCATGGGTGATCAAGTACCAGCAGATGGACTTTTTGTTTCAGGATACTCTCTTCTGATTAATGAATCTAGTTTAACAGGCGAGAGCGAACCAGTAAACATAAGTTGTCAAAACCCTTTCCTCTTGTCCGGAACAAAGGTTCAAGATGGTTCGTGTAAGATGGTTGTGACTTCTGTTGGAATGAGAACCCAATGGGGAAAACTAATGGCCACTCTTAGTGAAGGAGGAGATGATGAGACTCCTTTGCAGGTAAAGCTAAATGGGGTGGCAACAATTATTGGTAAAATTGGCCTGTTTTTTGCTGTTATAACTTTCTCTGTATTGGTTCAAGGATTGTTCACTCGCAAGCTACGAGAAGGGTCTTACTTTAGCTGGTCCGGAGAAGAAGCAATGGAAGTTTTGGAATTCTTTGCTGTTGCCGTAACTATTGTTGTGGTTGCTGTGCCTGAAGGATTGCCTTTGGCAGTGACACTGAGCCTTGCTTTTGCTATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGAACTTAGCTGCTTGTGAGACGATGGGATCAGCTACTACTATTTGTAGTGACAAAACTGGGACATTGACAACCAACCACATGACTGTTGTGAAAGCTTGCATCTGCAGCAAGATCAAGGAAGTTAGCGATTCTAACAAGTGTTTAAATTATCGTTCAGAACTTCCTGACAGTGCTGTTGGTATTTTACTGCAATCAATATTTAACAACACTGGTGGAGAAATAGTCAAGAACAAAGATGGCAAGAATGAGATACTTGGGACACCAACCGAGTCTGCTCTACTGGAATTTGGTCTATTGCTTGGTGGGGATTTCCAAAAAGAACGACAAAAGTCAAAAATTGCAAGAGTCGAGCCCTTCAATTCTTTGAAGAAACGCATGGGTGTTGTTTTAGAGCTTCCAACTGGTGACTTTCGTGCACACAGCAAAGGTGCTTCAGAGATCGTTTTGGCTTCATGCGATAAAGTTCTTGACATGAACGGTGAAGTAGTTCCTCTCAATGACGAATCTGTTAACTTTTTGAAGGAAACCATCGAAGAATTTGCGGGCGAAGCTCTTCGAACATTGTGCCTGGCTTACATGGACATTGAAGGTGAGTATCAGTCCGAAAGCCCGATTCCTGTAAGTGGCTACACATGCATAGGAATTGTTGGTATCAAGGATCCTGTTCGTCCGGGAGTCAAGGAGTCCGTTGCAATTTGCAAGGCCGCCGGTATAACCGTACGGATGGTTACGGGAGATAACATCACCACTGCCAAAGCAATTGCTAGAGAATGTGGAATTCTGACTGACGATGGTATAGCAATTGAAGGTCCTGTATTCCGGGAGAAGAATGAGGAAGAATTGAGTAAAATAGTACCAAAACTTCAGGTCATGGCTCGTTCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGGACCACTTTTCAAGAAGTCGTTGCAGTGACTGGCGATGGCACAAATGATGCACCGGCGCTTCATGAAGCCGATATTGGATTAGCTATGGGCATTGCTGGAACTGAGGTGGCAAAAGAGAGTGCTGATGTTATCATTCTCGACGACAACTTCTCTACAATTGCTACTGTTGCCAAATGGGGACGTTCAGTCTACATAAACATCCAGAAGTTCGTTCAGTTTCAGCTAACTGTGAATGTGGTTGCACTTCTCGTCAATTTTTCTTCAGCCTGTTTGACAGGAAATGCTCCCCTAACTGCTGTGCAACTACTATGGGTCAATATGATTATGGACACACTCGGAGCGCTTGCATTGGCGACCGAGCCTCCCACCGATGACTTGATGAAGAGGTTACCGGTTGGTCGGAAAGGGAATTTCATTAGCAACGTGATGTGGAGAAACATCTTAGGGCAGTCAATATACCAGTTTGTTATAATTTGGTATCTCCAGACAAAAGGGCAGGATCTTTTCCATCTTGATGGTCCAGACTCTGGGTTGATACTGAATACCCTGATTTTCAATGCCTTCGTCTTTTGTCAGGTATTCAATGAGATAAGCTCAAGAGACATGGAGAAAATAAATGTGTTTGAAGGAATATTGAAGAACTATGTGTTTGTGTTAGTGCTGGCTTGCACAGTGCTTTTCCAGATCATAATCATCCAATTTCTGGGAACATTTGCAAACACATATCCACTAAACTTCCAGCAATGGTTTGTGACTGTGTTGTTAGGGTTTCTTGGGATGCCAATTGCAGCAGCTTTGAAGATGATTCCAGTAGGATCAGACTGA | 3063 | 43.13 | MESYLNENFGDVKPKNSTDEALQRWRRLCWLVKNRKRRFRFTANLSKRFEADAIRRSNQEKFRVAVLVSQAALQFINGLDLSADYVVPEEVRQAGFKICADEAGTIVDGRDMKKLKIHGGAEGIATKLATSTETGIPTTDHLIKKRQEIYGINKFTECPSRGFWLFVWEALQDTTLMILAFCAVVSLLVGIVMEGWPKGAHDGLGIAASILLVVFVTATSDYRQSLQFKDLDKEKKKISVQVTRNGLRQKISIYELLPGDIVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNISCQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFSVLVQGLFTRKLREGSYFSWSGEEAMEVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKACICSKIKEVSDSNKCLNYRSELPDSAVGILLQSIFNNTGGEIVKNKDGKNEILGTPTESALLEFGLLLGGDFQKERQKSKIARVEPFNSLKKRMGVVLELPTGDFRAHSKGASEIVLASCDKVLDMNGEVVPLNDESVNFLKETIEEFAGEALRTLCLAYMDIEGEYQSESPIPVSGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPVFREKNEEELSKIVPKLQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSIYQFVIIWYLQTKGQDLFHLDGPDSGLILNTLIFNAFVFCQVFNEISSRDMEKINVFEGILKNYVFVLVLACTVLFQIIIIQFLGTFANTYPLNFQQWFVTVLLGFLGMPIAAALKMIPVGSD | 1020 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 23042008 | 23048269 | - | Sed0007641.1 | Sed13g1802 | 735312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1802 | 1020 | Gene3D | - | 142 | 337 | - | - | |
| Sed13g1802 | 1020 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| Sed13g1802 | 1020 | FunFam | Calcium-transporting ATPase | 773 | 1019 | - | - | |
| Sed13g1802 | 1020 | PRINTS | H+-transporting ATPase (proton pump) signature | 788 | 813 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed13g1802 | 1020 | PRINTS | H+-transporting ATPase (proton pump) signature | 756 | 772 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed13g1802 | 1020 | PRINTS | H+-transporting ATPase (proton pump) signature | 612 | 630 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed13g1802 | 1020 | Pfam | haloacid dehalogenase-like hydrolase | 740 | 800 | - | - | |
| Sed13g1802 | 1020 | SMART | Cation_ATPase_N_a_2 | 120 | 191 | IPR004014 | - | |
| Sed13g1802 | 1020 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 460 | 665 | IPR023299 | GO:0000166(InterPro) | |
| Sed13g1802 | 1020 | Pfam | E1-E2 ATPase | 237 | 433 | - | - | |
| Sed13g1802 | 1020 | SUPERFAMILY | HAD-like | 452 | 861 | IPR036412 | - | |
| Sed13g1802 | 1020 | NCBIfam | HAD-IC family P-type ATPase | 721 | 837 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed13g1802 | 1020 | NCBIfam | HAD-IC family P-type ATPase | 206 | 377 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed13g1802 | 1020 | NCBIfam | HAD-IC family P-type ATPase | 387 | 478 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed13g1802 | 1020 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 456 | 462 | IPR018303 | - | |
| Sed13g1802 | 1020 | SFLD | p-type atpase | 436 | 808 | IPR044492 | - | |
| Sed13g1802 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 756 | 775 | - | - | |
| Sed13g1802 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 285 | 299 | - | - | |
| Sed13g1802 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 653 | 664 | - | - | |
| Sed13g1802 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 675 | 685 | - | - | |
| Sed13g1802 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 454 | 468 | - | - | |
| Sed13g1802 | 1020 | PRINTS | P-type cation-transporting ATPase superfamily signature | 780 | 792 | - | - | |
| Sed13g1802 | 1020 | Gene3D | - | 17 | 77 | - | - | |
| Sed13g1802 | 1020 | CDD | P-type_ATPase_Ca_PMCA-like | 145 | 889 | - | - | |
| Sed13g1802 | 1020 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 334 | IPR008250 | - | |
| Sed13g1802 | 1020 | Gene3D | - | 464 | 660 | IPR023299 | GO:0000166(InterPro) | |
| Sed13g1802 | 1020 | Pfam | Cation transporter/ATPase, N-terminus | 118 | 186 | IPR004014 | - | |
| Sed13g1802 | 1020 | SFLD | Haloacid Dehalogenase | 436 | 808 | - | - | |
| Sed13g1802 | 1020 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 119 | 1016 | IPR023298 | - | |
| Sed13g1802 | 1020 | FunFam | Calcium-transporting ATPase | 217 | 337 | - | - | |
| Sed13g1802 | 1020 | PANTHER | CATION TRANSPORTING ATPASE | 87 | 1017 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Sed13g1802 | 1020 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 111 | 1017 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Sed13g1802 | 1020 | FunFam | Calcium-transporting ATPase | 464 | 660 | - | - | |
| Sed13g1802 | 1020 | Gene3D | - | 451 | 801 | IPR023214 | - | |
| Sed13g1802 | 1020 | Pfam | Cation transporting ATPase, C-terminus | 841 | 1015 | IPR006068 | - | |
| Sed13g1802 | 1020 | Gene3D | - | 169 | 1015 | - | - | |
| Sed13g1802 | 1020 | FunFam | Calcium-transporting ATPase | 649 | 801 | - | - | |
| Sed13g1802 | 1020 | Pfam | Cation transport ATPase (P-type) | 515 | 594 | - | - | |
| Sed13g1802 | 1020 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 50 | IPR024750 | GO:0005516(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed12g1101 | Sed-Chr12:7160757 | Sed13g1802 | Sed-Chr13:23042008 | 2.40E-296 | dispersed | |
| Sed13g1363 | Sed-Chr13:19121131 | Sed13g1802 | Sed-Chr13:23042008 | 1.90E-93 | dispersed | |
| Sed13g1802 | Sed-Chr13:23042008 | Sed14g0919 | Sed-Chr14:18280057 | 0.00E+00 | dispersed | |
| Sed03g0937 | Sed-Chr3:5798969 | Sed13g1802 | Sed-Chr13:23042008 | 0.00E+00 | transposed | |
| Sed13g1802 | Sed-Chr13:23042008 | Sed14g0918 | Sed-Chr14:18280057 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1802 | K01537 | - | csv:101221694 | 1874.37 |