Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1817 ATGTGCGCCGCCGTCTTCCGCTTCTCTGTTTACGTCGTCCCTCTTTTTCAGCTCATCGCCGCCGCCACCGCCGCCGCAGGGTCTCACTCCACGGTGGAGTTTCTGCCCGGATTTCCCGGTCCGCTTCCGTTCGAACTGGAAACTGGATATGTGGGTGTTGGGGATTTGGAGGAAGTTCAATTGTTTTATTATTTTGTAAAATCTGAAGGAAATCCACAAACCGATCCTCTGGTTTTTTGGCTGACCGGCGGTCCGGGTTGCTCTGCTTTGACTTCACTCGCTTTTGAAGTTGGTCCAATAAATTTTAAGATAGAGCAATATAATGGGAGCTTACCTCAAATAATCTTGAACCCTTACTCATGGACGAAGATATCTAGTATAATATTTGTAGATTTGCCGATAGACACCGGATTTTCATATGGTAAAACTCCTCAATCTCTTAAGACGGGTGATTTTAGTCAAGTTCACCATTCTGTTCAATTTTTGAAAAAGTGGTTGGTTGATCACCCAAAATTTATATCTAATCCATTTTATGTTGGTGGAGATTCATATTCTGGTATCACCATTCCCGTTATTGCTCAAGAGATTTTACAAGAAAACAACAAGCAAGTCTTACCATTCGTAAATCTTCAGGGATATGTATTAGGAAATCCAATCACCGATCGTAAATCATATAAAAATTTTGCAATTCCTTATGCTCATAGGATGACTCTTATTTCTGATGAATTATTTGAGTCATTGACCACTAGTTGTAAAGGCGAATACGTGAATATTGATCCGAGCAATGTGGATTGCTTAAGACATTACGATGCGTACCTAAAGTGTGTTTCAAATATCGAGAAATCAAATATTTTGTTGCCAAAGTGTCATCTTTCTTCTCCAAAGCAACAAAAAAATGCATTATTTGATCGAAGATCTCTATACAACTCACCCAAAGTGTTCCTCAATCCTAAGGCACAATTTCCTTCTCTTGATTGTCCGGCATATAAATTCCTATTTTCTTATTATTGGGCCAACAACAATCAAGTTCGAAAAGCACTTCACATACGTGAGGAAACTATAGGAGAATGGACGAGATGTAAGAAATCATTGAATTACAACTTTGATATTGAAAGTACTTTTCCTTATCATGTTAACCTTAGTGCTAAAGGTTATCGGTCTTTGATCTATAGTGGGGATCACGATATGATTGTATCACATTTGGACACTCAAACATGGATTAGATCCTTAAATTATTCCATAGTTGATGATTGGAGACCTTGGTTTATTGCAGATCAAGTAGCAGGATATACAAGAACCTATGCAAATAAGATGACATTTGCAACCATAAAAGGTGGAGGGCACACAGCAGAATATACACAAAAAGAATGCAGTGTAGTGTTTAGCAGATGGATAACTGGAGAATCATTGTAA 1413 38.5 MCAAVFRFSVYVVPLFQLIAAATAAAGSHSTVEFLPGFPGPLPFELETGYVGVGDLEEVQLFYYFVKSEGNPQTDPLVFWLTGGPGCSALTSLAFEVGPINFKIEQYNGSLPQIILNPYSWTKISSIIFVDLPIDTGFSYGKTPQSLKTGDFSQVHHSVQFLKKWLVDHPKFISNPFYVGGDSYSGITIPVIAQEILQENNKQVLPFVNLQGYVLGNPITDRKSYKNFAIPYAHRMTLISDELFESLTTSCKGEYVNIDPSNVDCLRHYDAYLKCVSNIEKSNILLPKCHLSSPKQQKNALFDRRSLYNSPKVFLNPKAQFPSLDCPAYKFLFSYYWANNNQVRKALHIREETIGEWTRCKKSLNYNFDIESTFPYHVNLSAKGYRSLIYSGDHDMIVSHLDTQTWIRSLNYSIVDDWRPWFIADQVAGYTRTYANKMTFATIKGGGHTAEYTQKECSVVFSRWITGESL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23125226 23130744 - Sed0003186.1 Sed13g1817 735327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1817 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed13g1817 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed13g1817 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed13g1817 470 PRINTS Carboxypeptidase C serine protease (S10) family signature 438 451 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed13g1817 470 FunFam Carboxypeptidase 325 469 - -
Sed13g1817 470 FunFam Serine carboxypeptidase-like 11 26 470 - -
Sed13g1817 470 Gene3D - 325 469 - -
Sed13g1817 470 Gene3D alpha/beta hydrolase 26 301 IPR029058 -
Sed13g1817 470 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 464 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Sed13g1817 470 Pfam Serine carboxypeptidase 36 466 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed13g1817 470 SUPERFAMILY alpha/beta-Hydrolases 32 467 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2731 Sed-Chr1:21927722 Sed13g1817 Sed-Chr13:23125226 8.70E-151 dispersed
Sed01g2732 Sed-Chr1:21985203 Sed13g1817 Sed-Chr13:23125226 1.10E-144 dispersed
Sed03g1305 Sed-Chr3:8374343 Sed13g1817 Sed-Chr13:23125226 5.40E-186 transposed
Sed06g0987 Sed-Chr6:13823984 Sed13g1817 Sed-Chr13:23125226 2.80E-95 transposed
Sed07g0503 Sed-Chr7:3802612 Sed13g1817 Sed-Chr13:23125226 2.00E-98 transposed
Sed01g2730 Sed-Chr1:21927722 Sed13g1817 Sed-Chr13:23125226 4.80E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1817 K16296 - csv:101207623 580.867