Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1818 ATGCCGATGGAATTAGGTTTGGTTGTTGTTGGTGGTGGTGGTGGTAATGGTGGGCAAGTTCTTGATGTCGAAACCGCCGTGAAAGATGGGATTCTCGGCGGCGGCGGGGTCATCTGCGACGGCGTAGTGGGTGGTGAGAAATTGGATCTGAAAGTTATGGTGGAGGAGCTTGAGAACATGGAGGTTCCTTCTGTTTTTATCTGCCCAATTTCATTAGAGCCAATGTTAGATCCTGTTACCCTTTGTACAGGACAGACTTATGAAAGATCCAATATCCTAAAATGGTTTTCTCTTGGCCATTTCACTTGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACCCCCAATAACACTCTTCACCAATTGATTCACACTTGGTTTTCCCAAAAGTATTTGCTGATGAAGAAGAGATCTGAGGATGTGCAGGGGAGGGCTCTTGAGCTTTTAGACACTTTGAAGAAGGTCAAGGGCCAAGCGAGAGTTCGAGCTTTGAAGGAGCTTCGGCAAGTTGTTGCGTCGAATTCTTCGGCGAAGAAGACCGTGGAGGATAATGGCGGTCTTGGTTTGATTTTGTCTTTGTTGGGTCCTTTCACATCCCATGCGGTTGGGTCCGAAGCTATTGGGATTTTGGTGAACTTGGATCTCGACTCTGAGTCTAGGAGGAACCTTGTTCAACCTGCGAAGATTTCGTTGATGGTGGATATGTTGAATGAGGGATCCACCGAGACTAAAATTAACTGCACTAGATTGATTGAAACTTTGCTGGATGGGGATGATTGCGGGGCGGATGCTATCTCGAGTTTAAGTCTCGTGGTTGGGTTGTTGAGATTAATCAAAGAGAAGAAACACACGAATGGTGTTCTTGCTGGCTTAAGATTGCTAAAAGTTCTGTGCTGTCAAGAACCAGTGAGGAATTCAGTAGTGAGCATTGGAGCAATCCCACAATTGATCGAAATTCTCCCGAATTTCAACCCCGAATGTTTGGAACTAGCTCTTCATGTATTGGACTCGCTTTCGCTTCTCTCTGAGGGCAGGGTGGCCTTAAAAGACTGCCCCAACACCATTCCAAACTTAGTCAAGTTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTGGCATTATCAATCTTATGGGCAGTTTGTAAACTTGCCCCTGAAGAATGCGCATCACAAGCGGTCGAAGCAGGCTTAGCAGCCAAGCTTCTTCTCGTGATACAGAGCGGTTGCAATCCCGTTCTGAAACAACGCTCGGCCGAACTTCTCAAGCTCTGCAGCTTGAATTACACAGCAACCCTCTTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1341 46.31 MPMELGLVVVGGGGGNGGQVLDVETAVKDGILGGGGVICDGVVGGEKLDLKVMVEELENMEVPSVFICPISLEPMLDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIHTWFSQKYLLMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRQVVASNSSAKKTVEDNGGLGLILSLLGPFTSHAVGSEAIGILVNLDLDSESRRNLVQPAKISLMVDMLNEGSTETKINCTRLIETLLDGDDCGADAISSLSLVVGLLRLIKEKKHTNGVLAGLRLLKVLCCQEPVRNSVVSIGAIPQLIEILPNFNPECLELALHVLDSLSLLSEGRVALKDCPNTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23145379 23147720 + Sed0008068.1 Sed13g1818 735328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1818 446 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed13g1818 446 SUPERFAMILY RING/U-box 56 132 - -
Sed13g1818 446 Gene3D - 135 434 IPR011989 -
Sed13g1818 446 PANTHER WDSAM1 PROTEIN 58 441 IPR045185 GO:0061630(InterPro)
Sed13g1818 446 SMART Ubox_2 65 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed13g1818 446 SUPERFAMILY ARM repeat 135 429 IPR016024 -
Sed13g1818 446 CDD RING-Ubox_PUB 63 113 IPR045210 -
Sed13g1818 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Sed13g1818 446 Pfam U-box domain 62 132 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2733 Sed-Chr1:22000313 Sed13g1818 Sed-Chr13:23145379 2.40E-199 wgd
Sed11g0913 Sed-Chr11:22329183 Sed13g1818 Sed-Chr13:23145379 1.90E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1818 - - - 0.0