Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1819 ATGTCATGGTTGGCTCGCTCCATTGCTGACACCCTTCGTCTCGAAGATGACGGCGACGAACCCAGCAACGACGCCGTTTCGCCACTCCCCTCCGCCGCCAATTCTCAATCCCACCTCCTCGCCGACGACGACTACGACGACGATGCATTGTCTCGCGGCGTCAAAGACGATTTGACCGAATTCAAACAAACCCTAACCCGCCAATTTTGGGGCGTCGCTTCGTTCCTTGCGCCTCCGCCGCCCCCTCCTCCCCTTCCGCCGCCGTTCCGTCCCCGGCCCGACCGGGATCTAAAGCCGCTGGAGGCGTCTAATCAGTCTGCTCGTTCGATCTCCGATCCGGTCGAGGTTTTGAAGATGCGTTCCAATCACGAGGAGTATGCGAAATCGGGGGATTTAGGGGAGGAATGCTATGAGGCAGATTGGGAAGATGCTGTTGGGATCACTGATGAAGTGTTGGCGTTTGCGACGAATATTGCAATGCACCCTGAGACTTGGATTGATTTCCCGATTGATGAGGAGGAGGATAATGATGATTTTGAAATGTCTGATGCCCAAAAAGAGCATGCTTTCACTATTGAACATCTTGCTCCTAGATTAGCTGCTCTCAGATTTGAGCTCTGTCCTTTCCATATGAGTGAGAGTTACTTTTGGAAAGTCTATTTTGTGCTCCTGCATTCGAGACTCAATAAGCACGATGCTGAGCTCTTATCTTCTCCACAGGTAGCAGAAGCCAGATCATTGTGGATGCAAGAATTACAAAAGAAGACCAAGCCGGAGTCTCTCTGGTGTGGAAGAGACAATTTTGAATTAAAAGACAACTCTGATGTGCTGCAGGATGATGGTAGTCCCATGGGCCATGAAGCTCATTCTGGATCTACGCTGCCTTGGACGTTTACATCTGTGCCAAGCATGTCATCTATTTCGAGCAATTACGAGACAGAAAAATATCAAACTGAACCTTCTGAAACACAGTTCATTGATAAGTCTGTCATAATTGAAAAACCTATAATTAAGAATGAGGACAGAAACCCCACAATTGGGTCGTCTTCAAAATTCCTTGTTCAAAGTTACGAGGACGAGTCAGATAATGAATGGCTAGAGGAAGACTCCGAGTTAGGTGGTTGTAATGGGACCATACTCACTCTGGAGAACGAAGAAGAGATCTCTTTCAGTGATCTCGACGATGACGATATGGTTCTGCCAGATAAATTCAAGATTGCTTCAAAAGAATAG 1233 47.85 MSWLARSIADTLRLEDDGDEPSNDAVSPLPSAANSQSHLLADDDYDDDALSRGVKDDLTEFKQTLTRQFWGVASFLAPPPPPPPLPPPFRPRPDRDLKPLEASNQSARSISDPVEVLKMRSNHEEYAKSGDLGEECYEADWEDAVGITDEVLAFATNIAMHPETWIDFPIDEEEDNDDFEMSDAQKEHAFTIEHLAPRLAALRFELCPFHMSESYFWKVYFVLLHSRLNKHDAELLSSPQVAEARSLWMQELQKKTKPESLWCGRDNFELKDNSDVLQDDGSPMGHEAHSGSTLPWTFTSVPSMSSISSNYETEKYQTEPSETQFIDKSVIIEKPIIKNEDRNPTIGSSSKFLVQSYEDESDNEWLEEDSELGGCNGTILTLENEEEISFSDLDDDDMVLPDKFKIASKE 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23154679 23159061 + Sed0009632.1 Sed13g1819 735329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1819 410 MobiDBLite consensus disorder prediction 75 90 - -
Sed13g1819 410 Gene3D BSD domain 141 238 IPR035925 -
Sed13g1819 410 SMART wurzfinal6 176 228 IPR005607 -
Sed13g1819 410 ProSiteProfiles BSD domain profile. 176 228 IPR005607 -
Sed13g1819 410 Pfam BSD domain 175 232 IPR005607 -
Sed13g1819 410 MobiDBLite consensus disorder prediction 73 107 - -
Sed13g1819 410 SUPERFAMILY BSD domain-like 146 233 IPR035925 -
Sed13g1819 410 MobiDBLite consensus disorder prediction 1 51 - -
Sed13g1819 410 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1819 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1819 Sed-Chr13:23154679 Sed13g1820 Sed-Chr13:23154679 9.80E-232 tandem
Sed13g1819 Sed-Chr13:23154679 Sed14g0941 Sed-Chr14:18426564 1.30E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g621 . Blo12g00993 . Bda03g00165 . Bpe04g00149 . . . . . Cma09g00302 Car01g01384 . . Cpe06g00212 . . . . . . . . . . . . . . . Cone4ag1626 . . . Lsi04g01466 Csa04g02495 . . . . . . . . . . Sed13g1819 Cmo01g01833 Cmo09g00301 . . . Car09g00254 . . Bhi09g03205 Tan01g4674 Cmetu07g0333 . Hepe01g1843 Mch11g0377 . . . . . . . . . . Chy07g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35