Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1825 ATGGATAATCTATCTCAGTCCTCAGGCGGACAGTTTCGTCCAATTATCCCAGCACAACCTGGCCAAACGTTCATTTCGTCATCTACCCCACAGTTCCAGTTAACAGGGCAGAATACATCTTCAAATGTTGGTGTTCCAGCTGGTCAAGTCCAGCCACATCAATATCCTCAATCAATGCCACAGTTAGTGCCAAGGCCAGGCCATCCTAGCTATGCCACTCCTTCATCCCAGGGTATTCAAATGCCTTATGTTCAGACAAGGCCTCTTTCTGTTCCACCTCAGACGCAGCAAAATGTGCCTGCACCAAATAGTCACATGCATGGCTTGGGTTTTCATGGAGTACCTCTTTCGTCACCATACACTTTCCAACCAATGTCACAAATGCATGCACCCGTTGGAGTTGGTAATGGTCAGCATTGGCCGTCTTCTGTGAGCCAGACTATAAACCCTGTTTCACAGATCGATCAAGCAAACCAACATTCTTCAGTTTCTACTGTAAACCCAGCTGCTAATGTTCCTACGTTCAATCAGCCATCTTCATCTGATTGGCAAGAGCATTCGGCTGATGGAAGAAGATATTATTACAACAAAAAAACCAAACAGTCTAGTTGGGAGAAGCCATTGGAACTTATGACACCACTTGAGAGAGCGGATGCATCAACGGTGTGGAAGGAATTTACATCCCCTGATGGAAGAAAGTACTATTACAATAAGGTGACAAAAGAATCAAAGTGGACCATGCCAGAAGAACTGAAGTTGGCTCGTGAGCAGGCTGAGAAAGAAGCTGTCCAAGGAACACAAACAAATATAGCTGTTACAACACCTCAACCTACACCTGCAGTTGGTCCTTCCCCTGCTGAAACACCAACAATTTCTTCCATTAACTCTAGCATTTCACCAACAGTTTCTGGGGTTGTATCAAGTCCAGTTTCAGTAACTCCTTTTGTTTCTGTATCCAATTCTCCTTCAGTGGTGGTTTCTGGGTCATTAGCCATTACCGGCACGCCCATTGCTTCAACAACTAGTATGACTGGAGTACAACCTTCTGTTATACCAGTTTCCTCTCAATCTGTTGTTGTTTCTGGAGGTACTGGTCCTCCTGCTGTGGTCCATGCCAATGCTTCGTCAATGACTGCTTTTGAAAGTCTTGCATCTCAAGATGTCAAAAACCCTGTTGATGGAACTTCTACCGAAGACATTGAGGAAGCAAGGAAGGGGATGGCAGTTGCAGGGAAAGTTAATGAGACTGTTTTAGAAGAAAAATCTGCTGATGATGAGCCATTGGTATTTGCCAACAAGCTGGAGGCAAAGAATGCATTTAAAGCTCTTCTGGAATCTGTTAATGTTCAGTCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATTAATGACAAAAGATATGGCGCCCTGAAAACTCTTGGTGAGCGGAAGCAAGCTTTCCATGAGTATTTAGGACATAGGAAAAAGTTGGATGCAGAAGAAAGACGCATTAGACAGAAAAAAGCTCGTGAGGAATTCACCAAGATGTTGGAAGAGTCCAAGGAACTCGCATCATCTACAAGATGGAGCAAAGCTGTTAGCATGTTTGAGAATGATGAACGGTTCAAAGCTGTTGAACGTTCTAGAGACCGGGAGGATCTTTTTGAAAGCTACATAGTGGAACTTGAGAGGAAGGAAAAAGAAAGGGCTGCAGAGGAGCACAAGAAAAATATTGCTGAATACAGGAAATTTCTTGAGTCATGTGATTACATAAAGGTGAGCAGCCAGTGGCGGAAAGTACAAGATCGATTGGAAGATGATGAAAGATGTTCACGTCTTGAGAAACTTGAACGTTTGCTTATTTTCCAGGACTATATACGTGACTTGGAAAAGGAGGAAGAGGAACAGAAGAAGATACAAAAGGAACATGTGCGAAGAATTGAAAGAAAAAACCGTGACGAGTTTCGCAAACTCATGGAAGAACACATTACTGTTGGTGCTTTTACAGCTAAAACTTTCTGGCGGGATTACTGTTTGAAGGTTAAGGAGTTGCCTCAGTATCAAGCTATTGCTTCTAATATATCTGGCTCAACACCGAAGGACTTGTTTGAGGATGTTCTCGAGGAATTAGAGAATAAGTATCATGAAGAAAAAGCTCAGATAAAAGATGTGATGAAGGCATCGAAGATTACCATCACATCATCATGGACATTTGATGACTTTAAGCTTGCCGTTGAAGACGGCGGTTCCCTTGAAGTTTCAGATATAAATTTTAAGCTTGTATACGAGGACTTACTAGAAAGAGCCAAAGAAAAGGAGGAGAAAGAAGCTAAAAGGCGTCAACGTTTGGCCGATGACTTGTCAAGGCTGCTTCAGTCATTCAAGGAGATTACAACTTCTTCCAACTGGGAGGATAGCAAACAGCTTTTTGAAGAGAGTGAAGAGTACAGATCAATAGGGGAAGAGAGCTTTGCGAAGGAAGTTTTTGACGAATACATCATGCATTTACAAGAAAAAGCAAAAGAAAAGGAACGTAAGCGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAACGCGAGGAAAAAGAGAAGCGGAAGGAGAAAGAGCGAAAGGAGAAGGAAAGAGAACGTGAAAAAGAAAAGGGCCGTGGTAAGAAGGATGAAACAGACAGTGAAAATATAGATGGAAGCGAAAGTCACGTCTACAGAGAAGACAAGAAAAGGGAAAAAGACAGAGACAGGAAACACCGGAAGCGGCATCATAGTGCCACTGATGATGGTGGTTCTGATAAAGATGAGAAAGAGGAGTCTAAGAAGTCCCGCAAACATGGCAGTGACCGAAAAAAATCGAGGAAGCATGCATATTCACCTGAATCAGACAATGAGAGTAGACACAGAAGGCACAAGAGAGACCGAGATGGCTCTCGTAGAAATGGTGGACATGATGAACTTGAAGATGGGGAGCTTGGAGAAGATGGGGAAATTCAATAG 2970 43.06 MDNLSQSSGGQFRPIIPAQPGQTFISSSTPQFQLTGQNTSSNVGVPAGQVQPHQYPQSMPQLVPRPGHPSYATPSSQGIQMPYVQTRPLSVPPQTQQNVPAPNSHMHGLGFHGVPLSSPYTFQPMSQMHAPVGVGNGQHWPSSVSQTINPVSQIDQANQHSSVSTVNPAANVPTFNQPSSSDWQEHSADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTSPDGRKYYYNKVTKESKWTMPEELKLAREQAEKEAVQGTQTNIAVTTPQPTPAVGPSPAETPTISSINSSISPTVSGVVSSPVSVTPFVSVSNSPSVVVSGSLAITGTPIASTTSMTGVQPSVIPVSSQSVVVSGGTGPPAVVHANASSMTAFESLASQDVKNPVDGTSTEDIEEARKGMAVAGKVNETVLEEKSADDEPLVFANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRIRQKKAREEFTKMLEESKELASSTRWSKAVSMFENDERFKAVERSRDREDLFESYIVELERKEKERAAEEHKKNIAEYRKFLESCDYIKVSSQWRKVQDRLEDDERCSRLEKLERLLIFQDYIRDLEKEEEEQKKIQKEHVRRIERKNRDEFRKLMEEHITVGAFTAKTFWRDYCLKVKELPQYQAIASNISGSTPKDLFEDVLEELENKYHEEKAQIKDVMKASKITITSSWTFDDFKLAVEDGGSLEVSDINFKLVYEDLLERAKEKEEKEAKRRQRLADDLSRLLQSFKEITTSSNWEDSKQLFEESEEYRSIGEESFAKEVFDEYIMHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKEREREKEKGRGKKDETDSENIDGSESHVYREDKKREKDRDRKHRKRHHSATDDGGSDKDEKEESKKSRKHGSDRKKSRKHAYSPESDNESRHRRHKRDRDGSRRNGGHDELEDGELGEDGEIQ 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23184481 23204147 - Sed0026244.1 Sed13g1825 735335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1825 989 CDD WW 223 250 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 Pfam FF domain 502 552 IPR002713 -
Sed13g1825 989 Pfam FF domain 644 699 IPR002713 -
Sed13g1825 989 Pfam FF domain 570 619 IPR002713 -
Sed13g1825 989 Pfam FF domain 435 484 IPR002713 -
Sed13g1825 989 SUPERFAMILY FF domain 560 629 IPR036517 -
Sed13g1825 989 ProSiteProfiles FF domain profile. 640 703 IPR002713 -
Sed13g1825 989 MobiDBLite consensus disorder prediction 157 186 - -
Sed13g1825 989 Gene3D FF domain 767 842 IPR036517 -
Sed13g1825 989 ProSiteProfiles FF domain profile. 500 555 IPR002713 -
Sed13g1825 989 SUPERFAMILY WW domain 182 215 IPR036020 GO:0005515(InterPro)
Sed13g1825 989 ProSitePatterns WW/rsp5/WWP domain signature. 183 207 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 Coils Coil 756 784 - -
Sed13g1825 989 MobiDBLite consensus disorder prediction 835 904 - -
Sed13g1825 989 Pfam WW domain 223 248 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 Pfam WW domain 181 207 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 Coils Coil 549 578 - -
Sed13g1825 989 Coils Coil 616 644 - -
Sed13g1825 989 Coils Coil 827 881 - -
Sed13g1825 989 FunFam Pre-mRNA-processing protein 40A 489 562 - -
Sed13g1825 989 Gene3D FF domain 433 488 IPR036517 -
Sed13g1825 989 ProSiteProfiles WW/rsp5/WWP domain profile. 217 250 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 ProSiteProfiles FF domain profile. 764 829 IPR002713 -
Sed13g1825 989 ProSiteProfiles FF domain profile. 568 622 IPR002713 -
Sed13g1825 989 MobiDBLite consensus disorder prediction 913 935 - -
Sed13g1825 989 MobiDBLite consensus disorder prediction 157 184 - -
Sed13g1825 989 CDD WW 181 209 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 FunFam Pre-mRNA-processing protein 40A 633 714 - -
Sed13g1825 989 SMART ww_5 178 209 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 SMART ww_5 218 250 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 SUPERFAMILY FF domain 492 562 IPR036517 -
Sed13g1825 989 Coils Coil 694 721 - -
Sed13g1825 989 FunFam Pre-mRNA-processing protein 40A 563 631 - -
Sed13g1825 989 ProSiteProfiles FF domain profile. 433 487 IPR002713 -
Sed13g1825 989 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 177 808 IPR039726 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005685(PANTHER)|GO:0045292(InterPro)|GO:0071004(PANTHER)
Sed13g1825 989 ProSiteProfiles WW/rsp5/WWP domain profile. 177 209 IPR001202 GO:0005515(InterPro)
Sed13g1825 989 FunFam pre-mRNA-processing protein 40A isoform X1 432 487 - -
Sed13g1825 989 SUPERFAMILY FF domain 635 710 IPR036517 -
Sed13g1825 989 Gene3D - 177 218 - -
Sed13g1825 989 Gene3D - 219 263 - -
Sed13g1825 989 FunFam Pre-mRNA-processing protein 40A 768 841 - -
Sed13g1825 989 Gene3D FF domain 563 632 IPR036517 -
Sed13g1825 989 Gene3D FF domain 633 715 IPR036517 -
Sed13g1825 989 Gene3D FF domain 489 562 IPR036517 -
Sed13g1825 989 SUPERFAMILY FF domain 775 836 IPR036517 -
Sed13g1825 989 SUPERFAMILY WW domain 210 251 IPR036020 GO:0005515(InterPro)
Sed13g1825 989 SUPERFAMILY FF domain 425 486 IPR036517 -
Sed13g1825 989 MobiDBLite consensus disorder prediction 835 989 - -
Sed13g1825 989 SMART FF_2 774 829 IPR002713 -
Sed13g1825 989 SMART FF_2 500 555 IPR002713 -
Sed13g1825 989 SMART FF_2 642 703 IPR002713 -
Sed13g1825 989 SMART FF_2 568 622 IPR002713 -
Sed13g1825 989 SMART FF_2 433 487 IPR002713 -
Sed13g1825 989 MobiDBLite consensus disorder prediction 944 961 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1825 K12821 - - csv:101203479 1468.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2321 Sed-Chr4:36860435 Sed13g1825 Sed-Chr13:23184481 6.10E-18 dispersed
Sed07g1143 Sed-Chr7:8568931 Sed13g1825 Sed-Chr13:23184481 8.90E-178 dispersed
Sed13g1825 Sed-Chr13:23184481 Sed13g1826 Sed-Chr13:23184481 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37