Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1830 ATGACTATGGAAGTTACTTCTGAGTATCAAAATCAAAGCCAAGCAACTAATTCCAACACCATGTCAAATAGATTCTTAACTACACAACAATATAATGTTGATTTGATTTCTCCCTTTTCTGTAATGCCACTCAAATCAGATGAATCTCTTTGTTTCATTGAGCCTATCAGAACCTCACAACCTCCAGAAATATTGCCTAATATGTCACCAAAGCTTGAGGACTTTCTTGGTGATGCAACTCATGGAAGAGAAGCCACAGCCTTGAGCTTAGACAGTATATATTACAACCAAAATGTTGAAGCTCATTCTGGAATGTTTCAGTTTCCAGCTGAGGATTCCAACAAGGAGTCTCAATTTGCAAGCTATTGTTTCGAATTTCGACACGCTATCGAGCAGCGTGTCGATGCCGGCTATGGATGGATGAATGGCCAAGACTTGCAGCCACTTAGCTTGTCAATGAGCCCTGGTTCTCAGTCTAGTTGTGTTACTGCTCCGAGCCAAATTTCTCAACCTGGACCAGCCACTTTGGATACAAAGAAAAGGGGTCTCCCCGGGCAGAAGCAGCCGGTCCATCGGAAGTCAATCGACACGTTCGGACAAAGAACTTCGCAGTACCGAGGTGTTACGAGACATAGATGGACTGGTAGATATGAAGCTCATTTGTGGGATAATAGTTGTAAGAAGGAAGGACAAACAAGGAAAGGAAGACAAGTTTATCTCGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTATTGGGGACTCTCCACACATTTAAACTTCCCGTTAAAGAACTATCAAGTCGAAGTCGAAGAAATGAAGAACATGAATCGTCAAGAATACGTCGCACACCTGAGAAGGAAAAGCAGTGGATTCTCTAGAGGAGCTTCAATATACAGAGGAGTTACTAGACATCATCAGCATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCGGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCAGCCGAAGCGTACGACATAGCAGCCATCAAGTTCCGTGGCGTAAACGCCGTTACAAACTTTGAAGCATCAAGGTACAATGTAGAAAGGATCATGGCGAGCAGCAGCCTCCTTTCAGGGGAGCTTGCAAGACGAAACAAAGAGCACAAACCAAACAACACCATCGAGCACGAAGAGCCGAAACAGAACACCGCTCAAACCAACCCCTCGGAGATATCCAACAACACCACCTTAGATTGGAGGACGGCATTCCACGACACCCTGCTGCTGGATCCGAACGCAACCAGTTACCTAAACCATCTGATGGAAGTCGAAACCGCAACAGCGAACGAACCGAGCAAGTTCGAGGCACATTTGTCGAATGCTTCCTCTGTGGTGAGCAGCTTGAGTAGTAGCTCAAGGGAAGCAAGTCCTGATAAGTCAAATGCCTCAGTGTTATTTGGAAACATTTGGGTGCCATCCACAGCCCAAATGAGGCCACCTCCATTTGTTTGGAATGATGTTTGA 1533 45.47 MTMEVTSEYQNQSQATNSNTMSNRFLTTQQYNVDLISPFSVMPLKSDESLCFIEPIRTSQPPEILPNMSPKLEDFLGDATHGREATALSLDSIYYNQNVEAHSGMFQFPAEDSNKESQFASYCFEFRHAIEQRVDAGYGWMNGQDLQPLSLSMSPGSQSSCVTAPSQISQPGPATLDTKKRGLPGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGLSTHLNFPLKNYQVEVEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAVTNFEASRYNVERIMASSSLLSGELARRNKEHKPNNTIEHEEPKQNTAQTNPSEISNNTTLDWRTAFHDTLLLDPNATSYLNHLMEVETATANEPSKFEAHLSNASSVVSSLSSSSREASPDKSNASVLFGNIWVPSTAQMRPPPFVWNDV 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23227047 23229831 + Sed0022165.1 Sed13g1830 735340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1830 510 Pfam AP2 domain 204 262 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 Pfam AP2 domain 307 356 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 SUPERFAMILY DNA-binding domain 203 271 IPR016177 GO:0003677(InterPro)
Sed13g1830 510 MobiDBLite consensus disorder prediction 400 416 - -
Sed13g1830 510 PRINTS Ethylene responsive element binding protein signature 346 366 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 PRINTS Ethylene responsive element binding protein signature 205 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 Gene3D AP2/ERF domain 306 365 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 Gene3D AP2/ERF domain 203 272 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 FunFam AP2-like ethylene-responsive transcription factor 305 366 - -
Sed13g1830 510 FunFam AP2-like ethylene-responsive transcription factor ANT 203 272 - -
Sed13g1830 510 ProSiteProfiles AP2/ERF domain profile. 204 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 CDD AP2 203 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 MobiDBLite consensus disorder prediction 392 416 - -
Sed13g1830 510 CDD AP2 305 366 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 SUPERFAMILY DNA-binding domain 305 365 IPR016177 GO:0003677(InterPro)
Sed13g1830 510 SMART rav1_2 204 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 SMART rav1_2 306 370 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 ProSiteProfiles AP2/ERF domain profile. 306 364 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1830 510 MobiDBLite consensus disorder prediction 152 174 - -
Sed13g1830 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 439 - -
Sed13g1830 510 MobiDBLite consensus disorder prediction 152 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1830 Sed-Chr13:23227047 Sed14g0860 Sed-Chr14:17108621 2.40E-41 dispersed
Sed13g1830 Sed-Chr13:23227047 Sed14g0948 Sed-Chr14:18604434 2.10E-127 wgd
Sed13g1830 Sed-Chr13:23227047 Sed07g1242 Sed-Chr7:9251397 1.00E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40462 PF00847 AP2 1.40E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1830 K09285 - csv:101212143 692.189