Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1831 ATGGGTGATCTTGAAAATGAAGAAATGGGGTTTAGAAATTCGAATGAGGGGTTGATGAATTCGGGTTCTTTGTTCGGGTCGGGTTGGGATCCGCTGGTTTCGTTAGGTCAAAGTGAGAATTTTGGAACAGCTTCAATGGTTTCAAATTCATTTCCTGCTGTTTTGGAGAATCATGGTTTGTCATGTTTTGGGAGTGGGAATTATTCAGACGTGTTTGGTTCTTCTTCTTCTTTTGGTCTTGCTGGTCAGATTCTTGGAGGCTGTTCTTCAAATTACAAGAATGTTGGAACTGAAAATGCTGCACAAACATCACTTGAAAACTTGCCTCCATCTTGTGAAGAAGAACCTGGTTTGGGATCACCAAATGGTAAAATTAGAAAAAGAGCCATTGATTCTACTTTCCCATTTAGCCCAAATAAGAAATCTGAAGGGAAATTGAAAAGGGATGTTTCAGGGGATAGTTCCAGTACACAAGAAGAGAAAAATGCAGAAATGGAACAGAATTTAAGTGGTAAAGCAAATGGAAAACAAGCTAAAGAGAAATCCAATAATAGTGGAGAAGCTCCTAAGGATAATTACATTCATGTGAGAGCTAGAAGAGGGCAGGCCACAAACAGCCATAGCCTTGCTGAGAGGGTAAGGAGGGAGAAGATTAGTGAGAGGATGAGATTGCTTCAAGAACTTGTCCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGTTTTTATCAATGAAACTCGCTACTGTCAACCCGGACGTAAACATCGATATCGAGAGGATTTTATCCAAAGATATTTTCCATGCACGAGGAAGCAATGCAACCACCCTTGGATTCGATTCTGGGATGAGTGCAGTTCCCCTGGTCCCTCCACACCGCATGTTTCAGTTTCCGGGGATGATGTCGAATATGCCAACCGCATCCACACAGTTTCCTCCTTTGCATCAGACAATGTTAGAAAGCGACCTTCAAAGTCTTCTACAAATGGGATTCGAATCGGGTTCGGCCATTGACAATATGGGACCAAATGGGAGGTTGAAACCAGAGTGTTAA 1101 41.96 MGDLENEEMGFRNSNEGLMNSGSLFGSGWDPLVSLGQSENFGTASMVSNSFPAVLENHGLSCFGSGNYSDVFGSSSSFGLAGQILGGCSSNYKNVGTENAAQTSLENLPPSCEEEPGLGSPNGKIRKRAIDSTFPFSPNKKSEGKLKRDVSGDSSSTQEEKNAEMEQNLSGKANGKQAKEKSNNSGEAPKDNYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNATTLGFDSGMSAVPLVPPHRMFQFPGMMSNMPTASTQFPPLHQTMLESDLQSLLQMGFESGSAIDNMGPNGRLKPEC 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23247158 23251356 + Sed0006513.1 Sed13g1831 735341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1831 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983(InterPro)
Sed13g1831 366 MobiDBLite consensus disorder prediction 101 193 - -
Sed13g1831 366 Pfam Helix-loop-helix DNA-binding domain 205 253 IPR011598 GO:0046983(InterPro)
Sed13g1831 366 MobiDBLite consensus disorder prediction 156 182 - -
Sed13g1831 366 MobiDBLite consensus disorder prediction 141 155 - -
Sed13g1831 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 267 IPR036638 GO:0046983(InterPro)
Sed13g1831 366 CDD bHLH_AtBPE_like 192 277 - -
Sed13g1831 366 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 137 332 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed13g1831 366 SMART finulus 208 258 IPR011598 GO:0046983(InterPro)
Sed13g1831 366 FunFam Basic helix-loop-helix transcription factor 199 271 - -
Sed13g1831 366 Gene3D - 199 272 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1869 Sed-Chr11:33289510 Sed13g1831 Sed-Chr13:23247158 1.50E-130 dispersed
Sed12g0702 Sed-Chr12:4204407 Sed13g1831 Sed-Chr13:23247158 4.00E-39 dispersed
Sed12g0703 Sed-Chr12:4204407 Sed13g1831 Sed-Chr13:23247158 7.40E-36 dispersed
Sed12g1240 Sed-Chr12:8862834 Sed13g1831 Sed-Chr13:23247158 5.70E-31 dispersed
Sed12g1916 Sed-Chr12:30294831 Sed13g1831 Sed-Chr13:23247158 2.00E-31 dispersed
Sed12g2081 Sed-Chr12:31556799 Sed13g1831 Sed-Chr13:23247158 4.10E-26 dispersed
Sed13g1831 Sed-Chr13:23247158 Sed13g1833 Sed-Chr13:23247158 8.00E-185 dispersed
Sed13g1831 Sed-Chr13:23247158 Sed13g1832 Sed-Chr13:23247158 3.10E-205 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40463 PF00010 HLH 3.60E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1831 - - - 0.0