Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1834 ATGGGTGATCTTGAAAATGAAGAAATGGGGTTTAGAAATTCGAATGAGGGGTTGATGAATTCGGGTTCTTTGTTCGGGTCGGGTTGGGATCCGCTGGTTTCGTTAGGTCAAAGTGAGAATTTTGGAACAGCTTCAATGGTTTCAAATTCATTTCCTGCTGTTTTGGAGAATCATGGTTTGTCATGTTTTGGGAGTGGGAATTATTCAGACGTGTTTGGTTCTTCTTCTTCTTTTGGTCTTGCTGGTCAGATTCTTGGAGGCTGTTCTTCAAATTACAAGAATGTTGGAACTGAAAATGCTGCACAAACATCACTTGAAAACTTGCCTCCATCTTGTGAAGAAGAACCTGGTTTGGGATCACCAAATGGTAAAATTAGAAAAAGAGCCATTGATTCTACTTTCCCATTTAGCCCAAATAAGAAATCTGAAGGGAAATTGAAAAGGGATGTTTCAGGGGATAGTTCCAGTACACAAGAAGAGAAAAATGCAGAAATGGAACAGAATTTAAGTGGTAAAGCAAATGGAAAACAAGCTAAAGAGAAATCCAATAATAGTGGAGAAGCTCCTAAGGATAATTACATTCATGTGAGAGCTAGAAGAGGGCAGGCCACAAACAGCCATAGCCTTGCTGAGAGGGTAAGGAGGGAGAAGATTAGTGAGAGGATGAGATTGCTTCAAGAACTTGTCCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGTTTTTATCAATGAAACTCGCTACTGTCAACCCGGACGTAAACATCGATATCGAGAGGATTTTATCCAAAGATATTTTCCATGCACGAGGAAGCAATGCAACCACCCTTGGATTCGATTCTGGGATGAGTGCAGTTCCCCTGGTCCCTCCACACCGCATGTTTCAGTTTCCGGGGATGATGTCGAATATGCCAACCGCATCCACACAGTTTCCTCCTTTGCATCAGGTAGTTAACTTTGGCAATCCTGTTTTGTTCTGTGTTCAACAACATTAA 1044 41.48 MGDLENEEMGFRNSNEGLMNSGSLFGSGWDPLVSLGQSENFGTASMVSNSFPAVLENHGLSCFGSGNYSDVFGSSSSFGLAGQILGGCSSNYKNVGTENAAQTSLENLPPSCEEEPGLGSPNGKIRKRAIDSTFPFSPNKKSEGKLKRDVSGDSSSTQEEKNAEMEQNLSGKANGKQAKEKSNNSGEAPKDNYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNATTLGFDSGMSAVPLVPPHRMFQFPGMMSNMPTASTQFPPLHQVVNFGNPVLFCVQQH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23247158 23251356 + Sed0006513.4 Sed13g1834 735344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1834 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983(InterPro)
Sed13g1834 347 Gene3D - 199 272 IPR036638 GO:0046983(InterPro)
Sed13g1834 347 FunFam Basic helix-loop-helix transcription factor 199 271 - -
Sed13g1834 347 MobiDBLite consensus disorder prediction 101 193 - -
Sed13g1834 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 267 IPR036638 GO:0046983(InterPro)
Sed13g1834 347 Pfam Helix-loop-helix DNA-binding domain 205 253 IPR011598 GO:0046983(InterPro)
Sed13g1834 347 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 137 316 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed13g1834 347 MobiDBLite consensus disorder prediction 156 182 - -
Sed13g1834 347 MobiDBLite consensus disorder prediction 141 155 - -
Sed13g1834 347 CDD bHLH_AtBPE_like 192 277 - -
Sed13g1834 347 SMART finulus 208 258 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1832 Sed-Chr13:23247158 Sed13g1834 Sed-Chr13:23247158 8.00E-185 dispersed
Sed13g1833 Sed-Chr13:23247158 Sed13g1834 Sed-Chr13:23247158 1.10E-194 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40466 PF00010 HLH 3.40E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1834 - - - 0.0