Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1835 ATGGCCCCCTCGTTTGATTGGTGGGGAAAGGACACTCATCGAGGAACCCCTGTTGTTGTTAAGATGGAGAATCCAAATTGGTCCATGGTTGAGCTGGAGGGTCCGTCGGAAAATGATTTTCTCATCTCCGGCGAATCTCCGGCGAGTCGGACCAGAGGGAAGAACGCCAAGCAACTCACGTGGGTTCTTCTCCTTAAAGCTCACAAGGCTGCTGGTTGTTTAACTTCCATTGGGTCTGCAATGGTGGACCTCGCCGCCGCCGTGAAACGCCGTGTTGCCTCTGGCCGGACTGACGTCGACGATGCCGAGAATGACGTCACGGTCGGAGCTAGGGAGAAAGAAAACCCTACTGTGAAGATGAGGTTTTATTCTTGTATTAAGGTGTTTTTGTGGCTGTCGGTGCTTCTTTTGTGCTTTGAAATTGCGGCTTTCTTTAAGGGTTGGCATTTTGGTGCTCCTAATCTTGAGTTGGGTTTTCTTTGGGAATCTCAATGGGGGTTTAAAGGGATTTTTGGGTGGATTTATGCTCAATGGGTGTTGATTAGAGTGGGGTATTTAGCTCCTCCTCTTCAGTTCTTGGCCAATGCTTGTATTGTTCTATTCTTCATTCAGAGTTTGGATCGTTTGATCTTGTGTCTGGGTTGTTTCTGGATTCGATTTAAGAAAATTCAACCAACTCTTAAACTTGATGATGAAGATGTTGAATCTGGTGAGAAGGGCTATTTTCCAATGGTTCTTGTTCAAATCCCCATGTGTAATGAAAAAGAGGTTTATCAGCAATCAATTGCTGCTATATGCAACTTGGATTGGCCTAGTTCCAGGTTGCTAATTCAAGTTCTTGATGATTCTGATGATCCAACTACCCAGTTGCTGATTAAAGAGGAGGTTCTTAAATGGCAGCATGAGGGTGCCAACATTGTTTATCGGCATCGAGTTATTAGAGATGGTTACAAGGCTGGCAACCTTAAATCTGCCATGAATTGTAGCTATGTTAAAGACTACGAATTCGTCGCGATCTTCGATGCCGATTTTCAACCCACGCCTGATTTCCTTAAGAGAACTGTTCCCCATTTCAAGGACAATGAAGAACTGGGGCTGGTTCAAGCAAGGTGGTCTTTTGTGAACAAGGACGAGAATTTGCTAACCAGGCTGCAGAACATCAATTTAGCTTTCCATTTTGAAGTAGAGCAGCAAGTGAACAGTGTGTTCTTGAACTTCTTTGGATTCAATGGCACTGCTGGTGTGTGGAGGATCAAAACTCTTGAGGAGGCTGGTGGGTGGCTTGAGAGGACCACGGTTGAAGATATGGATATCGCCGTCCGTGCTCATCTTCATGGATGGAAATTCATATTCCTTAATGATGTTGAGTGCCAATGTGAGTTACCAGAATCTTATGAAGCTTATCGAAAACAACAACATAGATGGCATTCTGGTCCAATGCAATTGTTTCGCCTTTGTTTGCCTGCTATTATTCGATCGAAGATTAGTGTATGGAAGAAGTTCAACTTGATCTTCCTCTTCTTTTTGCTTAGAAAATTGATATTGCCCTTCTATTCATTTACACTGTTCTGCATAATTCTCCCAATGACAATGTTCGTTCCGGAGGCCGAGCTACCTGCGTGGGTCGTTTGCTATATCCCAGCCACCATGTCGTTCTTAAACATTCTGCCTGCCCCAAAATCCTTTCCTTTCATTGTCCCATACCTCCTTTTCGAGAACACCATGTCAGTCACCAAGTTCAATGCCATGATCTCAGGCCTCTTCCAACTCGGCAGTGCCTACGAATGGGTTGTTACGAAGAAATCTGGCCGTTCCTCAGAAGGCGATCTCATATCCTTGGTAGAGAGAGAGAAAAAGCATCAAAGAGGGTCTTCAGCGCCTGAACTAGAAGAAATGACGGAAGAACTTCAAAAGCAAGAGCAAAAGGCTTTGCGAAAGAAGAAGCACAACCGAATATACATGAAAGAACTTGCATTGGCTTTCCTCCTCCTAACCGCTTCGGCACGGAGCCTTCTGTCTGCACAAGGGATCCATTTCTACTTCTTGCTGTTCCAGGGGATCTCGTTCCTGCTCGTCGGTTTGGACTTGATCGGAGAACAGATAGGTTGA 2109 45.05 MAPSFDWWGKDTHRGTPVVVKMENPNWSMVELEGPSENDFLISGESPASRTRGKNAKQLTWVLLLKAHKAAGCLTSIGSAMVDLAAAVKRRVASGRTDVDDAENDVTVGAREKENPTVKMRFYSCIKVFLWLSVLLLCFEIAAFFKGWHFGAPNLELGFLWESQWGFKGIFGWIYAQWVLIRVGYLAPPLQFLANACIVLFFIQSLDRLILCLGCFWIRFKKIQPTLKLDDEDVESGEKGYFPMVLVQIPMCNEKEVYQQSIAAICNLDWPSSRLLIQVLDDSDDPTTQLLIKEEVLKWQHEGANIVYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNSVFLNFFGFNGTAGVWRIKTLEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIRSKISVWKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLISLVEREKKHQRGSSAPELEEMTEELQKQEQKALRKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQIG 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23255083 23258721 - Sed0006141.1 Sed13g1835 735345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1835 702 Coils Coil 626 649 - -
Sed13g1835 702 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 235 460 IPR029044 -
Sed13g1835 702 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 172 700 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Sed13g1835 702 FunFam probable xyloglucan glycosyltransferase 5 236 461 - -
Sed13g1835 702 Pfam Glycosyl transferase family group 2 337 543 IPR001173 -
Sed13g1835 702 SUPERFAMILY Nucleotide-diphospho-sugar transferases 245 522 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0998 Sed-Chr9:32853630 Sed13g1835 Sed-Chr13:23255083 2.60E-245 dispersed
Sed10g1105 Sed-Chr10:11535056 Sed13g1835 Sed-Chr13:23255083 3.10E-108 dispersed
Sed13g1835 Sed-Chr13:23255083 Sed13g2106 Sed-Chr13:25730419 5.00E-260 dispersed
Sed10g1150 Sed-Chr10:15500216 Sed13g1835 Sed-Chr13:23255083 0.00E+00 transposed
Sed11g1870 Sed-Chr11:33295111 Sed13g1835 Sed-Chr13:23255083 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1835 - - - 0.0