Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1841 ATGGATGGCGATGGGCTTCTTCTCGGGCTGGGGCGGGGATCGAATGATCGATTGCACCCGGAAGCAGCCGATGTCAAGAAGAAGAAGCTGCAGGCTTTGAAGTTTGATGACATGTTCCCTTCGTTGACGTTGGGATTATCCATCATCGTCGAGAAGAGCGGTGTCGAATCATCGACGGAGGAGGAGTTGATTCAGCAGGGGTCTTCAGGGAGTACTCCGGGATCGTCGTTTTCGAATTCGTCGTCGGGGTTAAAGAGGGAGAGATTCGACGGTGAAGAGAAGGCGATCGAGGCGGAGACGGAGATGTGTATGAAAATTGGTCATGAGGAAGAGGAAGATGGAAGTCCGAGGAAGAAACTGAGATTAAGTAAAGAACAATCAGCCATTTTGGAAGATCATTTCAAAGAACATTCAAGCCTCAGCCCTAAGCAAAAGCAGGATTTGGCAAGACAGTTAAACCTAAGACCAAGACAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAACAAACAGAAATGGATTGTGAATTACTGAAAAAATTCTGTGAAAATCTGAAAGAAGAAAACACAAGGCTTCAAAAAGAGCTTCGAGAACTCAAATCACTCAAATTAACTGCGCCGCCGCTGTGCATGCAGCTACAAGCCGCCACCCTCACCGTTTGCCCGTCCTGCGGAGGCGGCCACGGCGGCGATGCATCTCCGGCCACCACTTTCTCCATCAGCCCAAAGCCTCACTTTCTTAAATTCCCCTTTAACCACCCATCGGCGGCTTGTTAG 789 48.92 MDGDGLLLGLGRGSNDRLHPEAADVKKKKLQALKFDDMFPSLTLGLSIIVEKSGVESSTEEELIQQGSSGSTPGSSFSNSSSGLKRERFDGEEKAIEAETEMCMKIGHEEEEDGSPRKKLRLSKEQSAILEDHFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKFCENLKEENTRLQKELRELKSLKLTAPPLCMQLQAATLTVCPSCGGGHGGDASPATTFSISPKPHFLKFPFNHPSAAC 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23345957 23348255 + Sed0022135.1 Sed13g1841 735351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1841 262 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 229 IPR050762 -
Sed13g1841 262 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677(InterPro)
Sed13g1841 262 Pfam Homeobox associated leucine zipper 173 206 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g1841 262 Pfam Homeodomain 117 171 IPR001356 GO:0003677(InterPro)
Sed13g1841 262 SUPERFAMILY Homeodomain-like 114 181 IPR009057 -
Sed13g1841 262 SMART HOX_1 115 177 IPR001356 GO:0003677(InterPro)
Sed13g1841 262 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed13g1841 262 SMART halz 173 216 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g1841 262 CDD homeodomain 116 174 IPR001356 GO:0003677(InterPro)
Sed13g1841 262 Coils Coil 172 209 - -
Sed13g1841 262 MobiDBLite consensus disorder prediction 1 20 - -
Sed13g1841 262 MobiDBLite consensus disorder prediction 59 84 - -
Sed13g1841 262 Gene3D - 121 171 - -
Sed13g1841 262 FunFam Homeobox-leucine zipper protein 18 104 178 - -
Sed13g1841 262 MobiDBLite consensus disorder prediction 57 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1841 Sed-Chr13:23345957 Sed14g0965 Sed-Chr14:18805674 1.70E-19 dispersed
Sed13g1841 Sed-Chr13:23345957 Sed14g0964 Sed-Chr14:18805674 1.50E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40468 PF00046 Homeodomain 1.60E-17 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1841 K09338 - csv:101212868 321.242