Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1842 ATGGAGGAATATAACAATCATCTAAACGAGACTTCAAATCCAAGAGGGAATTTCTTGTACGGATCGCAAATTGTTGGGGCAAGCTCTTCATCGGCTAATTTTGGCAGATCGAACAATCCAACGGCTCAGATGGGCGTAAATTCGTTTCATCTTCAACCAAATGATTGTTTTCAAACCGACACATCGCATCCGGTTGTGAAGACTGAAGCCGCCACTACTTCTCATCACCAAAATCTCAAATTTCACTACCCGCCGCCGACGACATGTCGGCCCGACGAAAACGGCGTCGTTGATGTTGAAGCCATGAAGGCCAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTTGAAGCCTACATGGAATGTCAAAAGGTCGGTGCTCCGCCGCTAGTGGTGGAGCGCCTGGTGGCGGCGCGGCAAGAATTTGAAGCACGGCGGCGATCTTCCATGAATTCCGGAGATACTACAAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAAGAACTTACAAGGCCGATTCAAGAAGCTATGGATTTCATGCGACGAATCGAATCTCAGCTCAGTTCTCTCTGTAATGGCCCAGTTCGGATCTTAAATTCCGATGAGAAATGTGAAGGTATTGGATCGTCTGACGAGGAACAAGATGTTAGCGGCGGAGAAACTGAGCTACCGGAGATCGACCCGCGTGCTGAAGACCGAGAACTGAAAAACCACCTACTGAGGAAGTATAGTGGTTACTTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGATGCAAGGCAAAAACTTCTTAATTGGTGGGAGTTGCATTACAAATGGCCATACCCTTCTGAGACAGAAAAAGTAGCATTGGCTGAATCAACAGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAATTCATGGTGATGGATGGCCTTCATCCTCCCAACGCCGCGCTCTACATCGATGGTCACTACATGACCGATGGCCACTATCGACTCGGACCATAA 1089 46.28 MEEYNNHLNETSNPRGNFLYGSQIVGASSSSANFGRSNNPTAQMGVNSFHLQPNDCFQTDTSHPVVKTEAATTSHHQNLKFHYPPPTTCRPDENGVVDVEAMKAKILAHPQYSSLLEAYMECQKVGAPPLVVERLVAARQEFEARRRSSMNSGDTTKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSSLCNGPVRILNSDEKCEGIGSSDEEQDVSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23357092 23363881 - Sed0020752.1 Sed13g1842 735352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1842 362 SMART ELK_2 244 265 IPR005539 GO:0003677(InterPro)
Sed13g1842 362 FunFam Homeobox protein knotted-1-like 2 269 331 - -
Sed13g1842 362 Pfam ELK domain 244 265 IPR005539 GO:0003677(InterPro)
Sed13g1842 362 ProSiteProfiles 'Homeobox' domain profile. 264 327 IPR001356 GO:0003677(InterPro)
Sed13g1842 362 Gene3D - 269 331 - -
Sed13g1842 362 ProSiteProfiles ELK domain profile. 244 264 IPR005539 GO:0003677(InterPro)
Sed13g1842 362 Pfam Homeobox KN domain 284 323 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed13g1842 362 Pfam KNOX1 domain 101 143 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1842 362 SMART KNOX2_2 151 202 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1842 362 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 334 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g1842 362 SUPERFAMILY Homeodomain-like 265 340 IPR009057 -
Sed13g1842 362 ProSitePatterns 'Homeobox' domain signature. 302 325 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed13g1842 362 CDD homeodomain 276 328 IPR001356 GO:0003677(InterPro)
Sed13g1842 362 MobiDBLite consensus disorder prediction 213 241 - -
Sed13g1842 362 SMART HOX_1 266 331 IPR001356 GO:0003677(InterPro)
Sed13g1842 362 Pfam KNOX2 domain 156 201 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1842 362 SMART KNOX1_2 100 144 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0619 Sed-Chr4:4788300 Sed13g1842 Sed-Chr13:23357092 7.00E-73 dispersed
Sed08g0113 Sed-Chr8:674054 Sed13g1842 Sed-Chr13:23357092 1.30E-69 dispersed
Sed10g0582 Sed-Chr10:3858229 Sed13g1842 Sed-Chr13:23357092 1.60E-73 dispersed
Sed13g1842 Sed-Chr13:23357092 Sed14g1325 Sed-Chr14:22133290 2.30E-75 dispersed
Sed13g1842 Sed-Chr13:23357092 Sed13g1843 Sed-Chr13:23357092 4.30E-138 tandem
Sed11g1865 Sed-Chr11:33267702 Sed13g1842 Sed-Chr13:23357092 4.00E-168 wgd
Sed11g0901 Sed-Chr11:21878629 Sed13g1842 Sed-Chr13:23357092 3.10E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40469 PF03791 KNOX2 1.30E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1842 - - - 0.0