Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1843 ATGGATTTTGAGCTGATAAAAATTGGAACTTTTTGTATTTTTTTCTCCTTGCAGGTCGGTGCTCCGCCGCTAGTGGTGGAGCGCCTGGTGGCGGCGCGGCAAGAATTTGAAGCACGGCGGCGATCTTCCATGAATTCCGGAGATACTACAAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAAGAACTTACAAGGCCGATTCAAGAAGCTATGGATTTCATGCGACGAATCGAATCTCAGCTCAGTTCTCTCTGTAATGGCCCAGTTCGGATCTTAAATTCCGATGAGAAATGTGAAGGTATTGGATCGTCTGACGAGGAACAAGATGTTAGCGGCGGAGAAACTGAGCTACCGGAGATCGACCCGCGTGCTGAAGACCGAGAACTGAAAAACCACCTACTGAGGAAGTATAGTGGTTACTTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGATGCAAGGCAAAAACTTCTTAATTGGTGGGAGTTGCATTACAAATGGCCATACCCTTCTGAGACAGAAAAAGTAGCATTGGCTGAATCAACAGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAATTCATGGTGATGGATGGCCTTCATCCTCCCAACGCCGCGCTCTACATCGATGGTCACTACATGACCGATGGCCACTATCGACTCGGACCATAA 771 45.27 MDFELIKIGTFCIFFSLQVGAPPLVVERLVAARQEFEARRRSSMNSGDTTKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSSLCNGPVRILNSDEKCEGIGSSDEEQDVSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23357092 23363093 - Sed0020752.2 Sed13g1843 735353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1843 256 MobiDBLite consensus disorder prediction 107 135 - -
Sed13g1843 256 ProSitePatterns 'Homeobox' domain signature. 196 219 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed13g1843 256 FunFam Homeobox protein knotted-1-like 2 163 225 - -
Sed13g1843 256 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 228 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g1843 256 SMART HOX_1 160 225 IPR001356 GO:0003677(InterPro)
Sed13g1843 256 CDD homeodomain 170 222 IPR001356 GO:0003677(InterPro)
Sed13g1843 256 SUPERFAMILY Homeodomain-like 159 234 IPR009057 -
Sed13g1843 256 Gene3D - 163 225 - -
Sed13g1843 256 ProSiteProfiles 'Homeobox' domain profile. 158 221 IPR001356 GO:0003677(InterPro)
Sed13g1843 256 SMART KNOX2_2 45 96 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1843 256 SMART ELK_2 138 159 IPR005539 GO:0003677(InterPro)
Sed13g1843 256 ProSiteProfiles ELK domain profile. 138 158 IPR005539 GO:0003677(InterPro)
Sed13g1843 256 Pfam KNOX2 domain 50 95 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1843 256 Pfam ELK domain 138 159 IPR005539 GO:0003677(InterPro)
Sed13g1843 256 Pfam Homeobox KN domain 178 217 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1865 Sed-Chr11:33267702 Sed13g1843 Sed-Chr13:23357092 6.80E-120 dispersed
Sed13g1843 Sed-Chr13:23357092 Sed14g1325 Sed-Chr14:22133290 1.80E-66 dispersed
Sed13g1842 Sed-Chr13:23357092 Sed13g1843 Sed-Chr13:23357092 4.30E-138 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40470 PF03791 KNOX2 7.80E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1843 - - - 0.0