Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1846 ATGATCGGCGAACATTCTAGATTTCATCAAACCATCCAAATCCCCCAATGGGACCCACTCGCCGGAATTCCCTCCTCCGCCGACGACGACCACTTCCACATGTTCGAGTTCAAAATCCGCAAATGCGCACGTGGGAGGTCGCACGATTGGACCGACTGTCCCTACGCCCATTCCGGCGAGAAGGCTCGCCGCCGGGACCCCAAAAAGTGCCGCTACTCCGGCGAGGCCTGCCCGGAGTTCCGAAAGGGGAACTGCAAGAAAGGCGATTCTTGCGATCTCGCTCACGGGATTTTCGAGTGTTGGCTCCACCCGACCCGCTACCGGACTCAGCCGTGCAAGGACGGCCTCGCCTGCCGCCGCCGTGTCTGTTTCTTCGCCCACTCGCCGGACCAGCTCCGGATTCCGCCGCTTTCCGGTGACCCCATGACTTCAATTCTAACCTCGCCCACTTCGATTCTTTCAAACCCGCTGCTCGATTCGCCTCCGATTTCCCCGAAACTCGCCGGTGGGTTGTTTCATTCGATGAATCGGCTTGTTTCTTCAATGGGTAGCCTTGAAATCGAGAAATTGAAATTAATTTCTCAATTCGGGGTTCAACTGGGCCGGAATTTGGGCTCTCCCGCCGGCGGCGGGTTCTACAGTTTCCCTGCGAGTCCGACCACCGGAAATTACGAACTATGGGGGAAAATTTACGAGGAAGAAGAACCTGTAATGGAAAGAGTGGAATCTGGGAAAAATCTACGAGCTAAAATGTATGAGAAATTAAGCAAAGACAACTCGGTTGAGCCTGCCGTGGATTCGACATTGACGCCGGATGTTGGATGGATTTCGGAGTTATTGATGTGA 846 54.49 MIGEHSRFHQTIQIPQWDPLAGIPSSADDDHFHMFEFKIRKCARGRSHDWTDCPYAHSGEKARRRDPKKCRYSGEACPEFRKGNCKKGDSCDLAHGIFECWLHPTRYRTQPCKDGLACRRRVCFFAHSPDQLRIPPLSGDPMTSILTSPTSILSNPLLDSPPISPKLAGGLFHSMNRLVSSMGSLEIEKLKLISQFGVQLGRNLGSPAGGGFYSFPASPTTGNYELWGKIYEEEEPVMERVESGKNLRAKMYEKLSKDNSVEPAVDSTLTPDVGWISELLM 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23420974 23422276 + Sed0017040.1 Sed13g1846 735356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1846 281 Gene3D - 68 135 - -
Sed13g1846 281 SMART c3hfinal6 106 129 IPR000571 GO:0046872(InterPro)
Sed13g1846 281 SMART c3hfinal6 71 97 IPR000571 GO:0046872(InterPro)
Sed13g1846 281 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872(InterPro)
Sed13g1846 281 PANTHER UNKEMPT FAMILY MEMBER 28 280 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1772 Sed-Chr3:11706287 Sed13g1846 Sed-Chr13:23420974 3.60E-71 dispersed
Sed08g0848 Sed-Chr8:6886229 Sed13g1846 Sed-Chr13:23420974 1.20E-74 dispersed
Sed13g0275 Sed-Chr13:1917940 Sed13g1846 Sed-Chr13:23420974 2.60E-41 dispersed
Sed11g0899 Sed-Chr11:21783224 Sed13g1846 Sed-Chr13:23420974 2.20E-66 wgd
Sed12g1796 Sed-Chr12:29019216 Sed13g1846 Sed-Chr13:23420974 1.60E-71 wgd
Sed13g1846 Sed-Chr13:23420974 Sed07g1240 Sed-Chr7:9231562 3.30E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40471 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1846 - - - 0.0