Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1849 ATGGGAATCTGCATATCCTCTGCATCTTCTCAGATTCGCCATGAAAATAAAGTTGGAGCTTTTTGTACGGCAAACGACCTCGTTTTTGAACAAGATTATAGCTTTGTCTGTGGGATTGAGAATCTTGATTCAATTTGCTCCACACAAGGCAGCAAAGGCCTCAACCAAGATGCTGCCTTTTGCTATCGGGGGTATGGAGAAGAGGGCAGAGAGTTGTTTGGTGTATTTGATGGGCATGGACAAAATGGTCATATTGTGAGCAACTTAGTGAAGAATAGGCTGCCTTGGCTGTTGCTTGGGCAGAGAAATGCTATGTCAAAAAGTGGAACAAATTTGGAAGAAATAAATTGTGAATATCACTTTGATGTTAGAGATGGGGAATTATTGGAACAAAGTCAGAATTTTGTTATGTGGAAAGAAGCTTTTGTCACTGCCTTTAAGGTGATGGACAAAGAGATCAAACTTCAACAGAATTTGGATTGTGTCTATAGTGGAACCACAGCTGTTATTGCTCTCAAACAAGGAGATGAATTGGTGATAGCAAATTTGGGGGATTCAAGGGCAGTGATGGGGAGAAAGACAGAAGATGGAATAACAGCCATTCAATTAACAACAGATTTGAAGCCAAATTTGCCAAGTGAGGGTGATAGGATAAGGAAATGTAATGGAAGAGTGTTGGCTTTGAAAGAGGAACCACACATACAAAGAATTTGGTTACCAGTGGAAAATGCACCGGGGCTGGCCATGTCAAGAGCTTTTGGAGACTTTGCTCTTAAAGATCACGGCGTTATTGCTCTTCCCGACGTCGCCCGCCGCCGTCTCACTCCCGACGACCAGTTCCTCCTCCTCGCCACCGATGGGATTTGGGATGTGCTAAGCAACGACGAAGTAGCGACGATCGTATGGGCGGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGGCGGAGGCCTGGAAACGCTACCCACCTTCCAAACTCGACGATTGCACCGTCGTTTGCCGCTTTCTACAAAAAACGCAGTAA 1035 45.89 MGICISSASSQIRHENKVGAFCTANDLVFEQDYSFVCGIENLDSICSTQGSKGLNQDAAFCYRGYGEEGRELFGVFDGHGQNGHIVSNLVKNRLPWLLLGQRNAMSKSGTNLEEINCEYHFDVRDGELLEQSQNFVMWKEAFVTAFKVMDKEIKLQQNLDCVYSGTTAVIALKQGDELVIANLGDSRAVMGRKTEDGITAIQLTTDLKPNLPSEGDRIRKCNGRVLALKEEPHIQRIWLPVENAPGLAMSRAFGDFALKDHGVIALPDVARRRLTPDDQFLLLATDGIWDVLSNDEVATIVWAAESEEAAAKAVVEAAAEAWKRYPPSKLDDCTVVCRFLQKTQ 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23460053 23464034 - Sed0011630.1 Sed13g1849 735359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1849 344 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169(InterPro)
Sed13g1849 344 Pfam Protein phosphatase 2C 66 319 IPR001932 -
Sed13g1849 344 CDD PP2Cc 44 302 IPR001932 -
Sed13g1849 344 ProSiteProfiles PPM-type phosphatase domain profile. 42 340 IPR001932 -
Sed13g1849 344 SUPERFAMILY PP2C-like 44 341 IPR036457 -
Sed13g1849 344 Gene3D - 43 344 IPR036457 -
Sed13g1849 344 SMART PP2C_4 30 338 IPR001932 -
Sed13g1849 344 PANTHER PROTEIN PHOSPHATASE 44 338 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1849 Sed-Chr13:23460053 Sed14g0603 Sed-Chr14:6105030 1.60E-62 dispersed
Sed13g1849 Sed-Chr13:23460053 Sed01g0675 Sed-Chr1:4958007 3.60E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1849 - - - 0.0