Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1853 ATGGTTTTTGTCATGGGGACGAACAAAACGTCGCCGTTGCAGGGGTTAGAGGCTGAGGAATATGAAGAGCTTGAAGGTGTGATTCAAAGTTACCACAAGTTTGAGGCTTGTCCTAACACCACCACCTCGCTCTTCACGCAACGCATCGATGCTCCTCTTTGCGTTGTTTGGCCCTTCGTCCGCAGCTTCGACAATCCTCAAAAGTATAAGCATTTCATCAAAGGATGCAACATGTCAGAGGGTGACGGAGGGGTCGGAAGCATCCGAGAGGTATCTGTCGTTTCAGGGCTACCGGCATCGACGAGCACAGAGAGGCTAGAGATATTAGACGAAGAGAAACATATATTGAGCTTTAGAGTAGTCGGAGGAGAGCATCGTCTAAACAATTACCGATCCGTAACATCGGTGAACGAGTTCAACAAAGATGGAAAGGTTTACACTATCGTTTTGGAGTCATACATTGTCGATATACCGGTGGGAAACACCGGCGAGGACACCAAAATGTTCGTGGATACTGTAATCAAATTGAATCTTCAAAAACTTGCTGGAGTTGCCACAGCCTCTCTGCATGAACATGAATAG 582 46.74 MVFVMGTNKTSPLQGLEAEEYEELEGVIQSYHKFEACPNTTTSLFTQRIDAPLCVVWPFVRSFDNPQKYKHFIKGCNMSEGDGGVGSIREVSVVSGLPASTSTERLEILDEEKHILSFRVVGGEHRLNNYRSVTSVNEFNKDGKVYTIVLESYIVDIPVGNTGEDTKMFVDTVIKLNLQKLAGVATASLHEHE 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23494419 23496435 - Sed0016841.1 Sed13g1853 735363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1853 193 PANTHER OS03G0300400 PROTEIN-RELATED 45 172 IPR050279 GO:0004864(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009738(PANTHER)|GO:0010427(PANTHER)|GO:0038023(PANTHER)
Sed13g1853 193 CDD PYR_PYL_RCAR_like 46 185 - -
Sed13g1853 193 Pfam Polyketide cyclase / dehydrase and lipid transport 46 184 IPR019587 -
Sed13g1853 193 SUPERFAMILY Bet v1-like 42 186 - -
Sed13g1853 193 Gene3D - 4 193 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1853 K14496 - - csv:101214314 327.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0833 Sed-Chr4:7079350 Sed13g1853 Sed-Chr13:23494419 5.40E-48 dispersed
Sed05g0294 Sed-Chr5:1866757 Sed13g1853 Sed-Chr13:23494419 1.00E-49 dispersed
Sed13g1853 Sed-Chr13:23494419 Sed14g0613 Sed-Chr14:6194906 4.90E-48 dispersed
Sed13g1853 Sed-Chr13:23494419 Sed01g4105 Sed-Chr1:69927775 3.90E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g69 Blo01g01471 . Bda01g00614 . . Bpe02g00483 . Bma01g02218 . . Cma01g01741 . Car09g00280 . . . Cpe06g00236 . . . . . . . Cla05g01824 Cam05g1946 Cec05g1959 . Clacu05g1938 Cmu05g1819 . Cone4ag1655 Cone7ag1296 Cone17ag0922 Cone20ag0265 Lsi04g01433 . . . . . . . . . . . Sed13g1853 Cmo01g01771 Cmo09g00331 Cma09g00331 . Car01g01353 . . . Bhi09g03166 Tan01g4639 Cmetu07g0839 . Hepe01g1873 . . . . . . . . . . . . Cme07g00232
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012374 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 2 1 0 1 1 1 1 1 0 0 1 1 1 29