Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1856 ATGTCGAAAATGAAACATATTCTTCGAAAGCTTCACATCGGTGGCGGTGGGGGTTTTAACGAGCACCAGCGATTGAGCGATGGCGGCCGACCCAGTTCGAGTCCAAGCCCTAATAATGATCCTTCGGGTTCGTCTTCTTCTGGGTCGGCTTCTTCTTTGGCTATGGCGTCTTCCGCTGCAATGGGCGGTGGATTGGAGGCCGTTGATTCGGTTGTCGATCGGACCGCGGATGTCGGTGGCGGCGGGTGCGTCGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTCCAATTGGCTATGGCGATTAGTGTTTCCGATCCTGATTCTCGACAAGATACTGAGTCTGCTCAGATCGATGCTGCTAAGCGGATGAGCCTTGGTTGTTCGCCTTCGGTTTCCGGCAGTCAGGCTCTTGCTGAATTTCTATCCCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAATTGATGGATGGATTTTATGACTTGTACGGCATTACTGCAAACTCTAGCTCCCGAGGAAAGATGCCACTGTTAGTTGATCTTAAGGAAATATGTGTTACAAGTGATATTGATTATGAAGTGATTCTGGTGAACCGCGTGCTTGATCGTGATCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAAAGCAGAGTTCCTGAATCTGGCTTCATTTTAAGTGGCTTGGTTCAAAAAATTGCTGATATAGTTGTTGCTAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGCTGAGACGGTGGACCCTCAGGAGTTACGAGTTGCGTAGTTCTTTGAACACGATCGTTCTACCCCTTGGGCTTGTTGATATTGGACTTGCACGTCATAGAGCTTTGCTTTTCAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCCACTACACTGGGACTGATGATGGAGCTGTGAATATGATCAAAATTGATAATGGGAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCTAGTGGTCAGGTTTCGAATTATGGCTTTGATAGGGGACCTGCAAATGTTATGGTAGTTCCTGAAGATACGCCAGTATTACAAAATGAAGCAACTGAAGCTGTATCGAAATCATTTACTCAAGAGGGAGTTACAAATGTTTGCAACTCAATATTCAAAGAAGCTTCAAATTTAAGTGTTCAATCAAAAGAAAATGGTAGAAACTTTATTGAAGAAATTCAAGCTGGGAGTTCTGATTATGATTTTGGGAGACTTCTAGAATCAGAAAGCTGTGCATGCGAAAGTTCATCGGATGCATGTGCGCAGTCGGCGTCTGCACAAAAAAAGAAAGTTAAGAAAGTATCAAAGTATGTCATCAGTGCTGCAAAGAACCCAGAGTTTGCACAGAAATTGCATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATGGATTCACAGGATAAAGGTGAAAGAAAAGCGATTCGTCAACTGTATTCAATCAATGGAAAAGGCATGGATGTTGGGCTTCAGTGTGACCCTTTTGTGTTAGCAAGCCAGGGACAGTCTTCTGCTACTTTTACTGAAGCAGAGTATTTGAACAATGCTGTCCATGAAAATAAGCAGAAATCATGTACTGAGGGATCAACCGAAGAACGGAAACCTGAAACAAATGCAAACAAACACGACATTTTATGGCCTAACAGCATGGAAAATGAGCGGTTTGTGTTTCTTGATGTTGATGGTGATGCAGGAAAATTGGTTGAAGAAAGAAGATGGTTGCAAGATAAGAGTGACGGCGGAACTCTTCAGTGTTTTAATTTTCATGAAAACCTTCCAAAACATGCTAGTGATGGCCACAATGAGACAGTTAACCCAATATTAGGCGAAGTTGCAGAGTGGGAAATTCCTTGGGAGGATCTTGACATTGGTGAACGTATTGGTATTGGTTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTCAAGAAGTTCTTGGACCAGGATTTATCTGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCCAATGTTGTCCTTTTCATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACAGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTTCTGCATCGTCCCAACTCTCAACTTGATGAAAGGAGGCGATTGAAAATGGCACTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGCCATCCAACTATTGTTCATAGAGATCTAAAATCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTCGGTTTGTCACGTGTCAAGCAGAATACATTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTTTAAGGAATGAACCGGCTGACGAGAAGTGTGATGTGTATAGTTTTGGCGTGATCTTGTGGGAGTTGACGACATGTCGCATACCGTGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAAAATAGGCGCCTGGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGATTGTTGGCAAATAGACACGCAACTGAGACCGTCATTCTCTCAGCTTATCACTCGATTACGACGCCTTCAACGGCTTGTTCAGAAACCAAACCCAAGGAATCAAATACCAGAGTGA 2772 43.51 MSKMKHILRKLHIGGGGGFNEHQRLSDGGRPSSSPSPNNDPSGSSSSGSASSLAMASSAAMGGGLEAVDSVVDRTADVGGGGCVDFNALEEEFQVQLAMAISVSDPDSRQDTESAQIDAAKRMSLGCSPSVSGSQALAEFLSLQYWSYNVVNYDEKLMDGFYDLYGITANSSSRGKMPLLVDLKEICVTSDIDYEVILVNRVLDRDLQQLERQAYNIFMESRVPESGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIVLPLGLVDIGLARHRALLFKVLADRINLPCILVKGSHYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSGQVSNYGFDRGPANVMVVPEDTPVLQNEATEAVSKSFTQEGVTNVCNSIFKEASNLSVQSKENGRNFIEEIQAGSSDYDFGRLLESESCACESSSDACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDMDSQDKGERKAIRQLYSINGKGMDVGLQCDPFVLASQGQSSATFTEAEYLNNAVHENKQKSCTEGSTEERKPETNANKHDILWPNSMENERFVFLDVDGDAGKLVEERRWLQDKSDGGTLQCFNFHENLPKHASDGHNETVNPILGEVAEWEIPWEDLDIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRFLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPADEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQIDTQLRPSFSQLITRLRRLQRLVQKPNPRNQIPE 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23515876 23532794 - Sed0022080.1 Sed13g1856 735366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1856 923 Gene3D Transferase(Phosphotransferase) domain 1 732 917 - -
Sed13g1856 923 ProSitePatterns Protein kinases ATP-binding region signature. 659 681 IPR017441 GO:0005524(InterPro)
Sed13g1856 923 FunFam Serine/threonine-protein kinase isoform 1 644 731 - -
Sed13g1856 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1856 923 MobiDBLite consensus disorder prediction 12 53 - -
Sed13g1856 923 SUPERFAMILY Protein kinase-like (PK-like) 637 903 IPR011009 -
Sed13g1856 923 ProSiteProfiles Protein kinase domain profile. 653 912 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1856 923 PANTHER SERINE-THREONINE PROTEIN KINASE 27 908 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed13g1856 923 PRINTS Tyrosine kinase catalytic domain signature 727 740 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1856 923 PRINTS Tyrosine kinase catalytic domain signature 832 854 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1856 923 PRINTS Tyrosine kinase catalytic domain signature 813 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1856 923 PRINTS Tyrosine kinase catalytic domain signature 766 784 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1856 923 PRINTS Tyrosine kinase catalytic domain signature 876 898 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1856 923 FunFam Serine/threonine-protein kinase CTR1 732 915 - -
Sed13g1856 923 MobiDBLite consensus disorder prediction 26 53 - -
Sed13g1856 923 CDD STKc_MAP3K-like 659 905 - -
Sed13g1856 923 Pfam Ethylene-responsive protein kinase Le-CTR1 138 342 - -
Sed13g1856 923 Gene3D Phosphorylase Kinase; domain 1 646 730 - -
Sed13g1856 923 Pfam Protein tyrosine and serine/threonine kinase 654 905 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1856 923 SMART serkin_6 653 912 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1761 Sed-Chr1:12837417 Sed13g1856 Sed-Chr13:23515876 3.40E-185 dispersed
Sed05g3195 Sed-Chr5:41737629 Sed13g1856 Sed-Chr13:23515876 6.90E-72 dispersed
Sed05g3196 Sed-Chr5:41737629 Sed13g1856 Sed-Chr13:23515876 1.50E-71 dispersed
Sed08g1279 Sed-Chr8:26541443 Sed13g1856 Sed-Chr13:23515876 2.00E-184 dispersed
Sed09g0310 Sed-Chr9:2768530 Sed13g1856 Sed-Chr13:23515876 1.00E-96 dispersed
Sed13g1856 Sed-Chr13:23515876 Sed14g0330 Sed-Chr14:3397525 1.40E-113 dispersed
Sed11g1836 Sed-Chr11:33151905 Sed13g1856 Sed-Chr13:23515876 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80108 PF07714 PK_Tyr_Ser-Thr 2.20E-65 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1856 K04424 - csv:101214554 1423.68